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Update nested_data.py #161

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Update nested_data.py #161

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ffe611e
Update nested_data.py
SonQBChau Nov 30, 2023
9056dff
Update regenerate-schema.yml
SonQBChau Nov 30, 2023
641f337
Update regenerate-schema.yml
SonQBChau Nov 30, 2023
26bb86b
Update regenerate-schema.yml
SonQBChau Nov 30, 2023
5e98222
Update regenerate-schema.yml
SonQBChau Nov 30, 2023
0bdab4c
Update regenerate-schema.yml
SonQBChau Nov 30, 2023
bc0dad1
Update regenerate-schema.yml
SonQBChau Nov 30, 2023
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14 changes: 8 additions & 6 deletions .github/workflows/regenerate-schema.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -48,14 +48,16 @@ jobs:
export DJANGO_SETTINGS_MODULE=config.settings.base
python manage.py export_openapi_schema --api chord_metadata_service.mohpackets.apis.core.api | python -m json.tool > chord_metadata_service/mohpackets/docs/schema.json

- name: Convert schema to OpenAPI documentation
run: |
npx widdershins ./chord_metadata_service/mohpackets/docs/schema.json -o ./chord_metadata_service/mohpackets/docs/schema.md -u ./chord_metadata_service/mohpackets/docs/widdershins/templates/openapi3 -c true --omitHeader true
# - name: Convert schema to OpenAPI documentation
# run: |
# npx widdershins ./chord_metadata_service/mohpackets/docs/schema.json -o ./chord_metadata_service/mohpackets/docs/schema.md -u ./chord_metadata_service/mohpackets/docs/widdershins/templates/openapi3 -c true --omitHeader true

- name: Convert schema.json to schema.yml
run: python -c 'import json, yaml; json.load(open("chord_metadata_service/mohpackets/docs/schema.json")); print(yaml.dump(json.load(open("chord_metadata_service/mohpackets/docs/schema.json"))))' > chord_metadata_service/mohpackets/docs/schema.yml
# - name: Convert schema.json to schema.yml
# run: python -c 'import json, yaml; json.load(open("chord_metadata_service/mohpackets/docs/schema.json")); print(yaml.dump(json.load(open("chord_metadata_service/mohpackets/docs/schema.json"))))' > chord_metadata_service/mohpackets/docs/schema.yml

- uses: stefanzweifel/git-auto-commit-action@v5
with:
file_pattern: 'chord_metadata_service/mohpackets/docs/schema.*'
commit_message: Regenerate schema
commit_message: Regenerate schema
skip_fetch: true
push_options: '--force'
4 changes: 1 addition & 3 deletions chord_metadata_service/mohpackets/schemas/nested_data.py
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Expand Up @@ -211,9 +211,7 @@ class DonorWithClinicalDataSchema(ModelSchema):
followups: List[NestedFollowUpSchema] = Field(..., alias="followup_set")
biomarkers: List[NestedBiomarkerSchema] = Field(..., alias="biomarker_set")
exposures: List[NestedExposureSchema] = Field(..., alias="exposure_set")
comorbidities_test_test_test: List[NestedComorbiditySchema] = Field(
..., alias="comorbidity_set"
)
comorbidities: List[NestedComorbiditySchema] = Field(..., alias="comorbidity_set")

class Config:
model = Donor
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