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Add install.R to include additional R packages #1

Add install.R to include additional R packages

Add install.R to include additional R packages #1

Workflow file for this run

name: Test container image build
on:
pull_request:
paths:
- 'environment.yml'
- 'install.R'
# Trigger rebuilds if the test process changes
- '.github/workflows/test.yaml'
jobs:
test-build:
runs-on: ubuntu-latest
steps:
# For biggish images, github actions runs out of disk space.
# So we cleanup some unwanted things in the disk image, and reclaim that space for our docker use
# https://github.com/actions/virtual-environments/issues/2606#issuecomment-772683150
# and https://github.com/easimon/maximize-build-space/blob/b4d02c14493a9653fe7af06cc89ca5298071c66e/action.yml#L104
# This gives us a total of about 52G of free space, which should be enough for now
- name: cleanup disk space
run: |
sudo rm -rf /usr/local/lib/android /usr/share/dotnet /opt/ghc
df -h
- name: checkout files in repo
uses: actions/checkout@main
- name: Build the image and push it if `NO_PUSH` disabled
uses: jupyterhub/repo2docker-action@master
with: # make sure username & password/token matches your registry
NO_PUSH: "true"
DOCKER_REGISTRY: "quay.io"
IMAGE_NAME: "cryointhecloud/cryo-hub-r-image"
# Put repo contents in /srv/repo, so they aren't mangled when we put user home in /home/jovyan
REPO_DIR: /srv/repo
# Lets us monitor disks getting full as images get bigger over time
- name: Show how much disk space is left
run: df -h