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renamed logs folder
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Daniel-VM committed Aug 2, 2024
1 parent e874171 commit d465ecf
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

# Create folders
mkdir -p fasta_inputs
mkdir -p slurm_logs
mkdir -p logs

# Find all .gz files and write them to a file list
# TODO: add if to check >1 fasta files are available in assembly results
Expand All @@ -25,8 +25,8 @@ cat <<EOF > _00_unzip_jobarray.sbatch
#SBATCH --partition short_idx
#SBATCH --array=1-$num_files
#SBATCH --chdir $scratch_dir
#SBATCH --output slurm_logs/slurm-%A_%a.out
#SBATCH --error slurm_logs/slurm-%A_%a.err
#SBATCH --output logs/slurm-%A_%a.out
#SBATCH --error logs/slurm-%A_%a.err
# Get the file to process
file=\$(sed -n "\${SLURM_ARRAY_TASK_ID}p" $ASSEMBLY_LIST)
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