Skip to content

Commit

Permalink
fixed typos in talk
Browse files Browse the repository at this point in the history
  • Loading branch information
Nick Bohmann committed Oct 9, 2023
1 parent 65df7cf commit d47ffbf
Showing 1 changed file with 5 additions and 11 deletions.
16 changes: 5 additions & 11 deletions docs/16S/talk.md
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ from the *ISB Microbiome Course 2023*

---

## Let's Start Learning 📚
## Let's Start Learning :books:

First, we'll need the slides, full of _digestible_ information

Expand All @@ -35,7 +35,7 @@ First, we'll need the slides, full of _digestible_ information

---

## Guts, Camera, Action 🎬
## Guts, Camera, Action :movie_camera:


📕 Let's switch to the notebook and get started
Expand Down Expand Up @@ -181,7 +181,7 @@ courtesy of [Stephanie Swegle](https://see.isbscience.org/steam2019/stephanie-3/

---

## Artifact Hunting 🤠
## Artifact Hunting

To start, we'll import our raw data into QIIME as an __artifact__

Expand All @@ -191,7 +191,7 @@ To start, we'll import our raw data into QIIME as an __artifact__

---

## Denoising with DADA 2 🔇
## Denoising with DADA 2

We just ran the DADA2 plugin for QIIME, which is doing 3 things:

Expand All @@ -213,7 +213,7 @@ We just ran the DADA2 plugin for QIIME, which is doing 3 things:

---

## Identifying alternative sequence variants (ASVs)
## Identifying amplicon sequence variants (ASVs)

<img src="assets/dada2.png" width="80%">

Expand Down Expand Up @@ -306,12 +306,6 @@ arranged by *sequence similarity* (branch length).

---

You can visualize your tree using iTOL (https://itol.embl.de/).

<img src="assets/tree.png" width="75%">

---

## Principal Coordinate Analysis

<img src="assets/pcoa.png" width="100%">
Expand Down

0 comments on commit d47ffbf

Please sign in to comment.