feat: QADB for RG-A Fa18 #946

Workflow file for this run

	name: ci

	on:
	pull_request:
	push:
	branches:
	- main

	defaults:
	run:
	shell: bash

	env:
	dataset: ci_test
	# NOTE: if any of these versions are changed, update the POM files too
	java_version: 17
	java_distribution: zulu
	groovy_version: 4.x


	concurrency:
	group: ${{ github.workflow }}-${{ github.event.pull_request.number \|\| github.ref }}
	cancel-in-progress: true

	jobs:

	# build
	#############################################################################

	build_timelines:
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v4
	- name: setup java
	uses: actions/setup-java@v4
	with:
	java-version: ${{ env.java_version }}
	distribution: ${{ env.java_distribution }}
	- name: build
	run: mvn package
	- name: tar # to preserve any permissions
	run: \|
	tar cavf build_detectors.tar.zst detectors/target
	tar cavf build_monitoring.tar.zst monitoring/target
	- uses: actions/upload-artifact@v4
	with:
	name: build_timelines
	retention-days: 1
	path: build*.tar.zst

	build_coatjava:
	runs-on: ubuntu-latest
	steps:
	- name: setup java
	uses: actions/setup-java@v4
	with:
	java-version: ${{ env.java_version }}
	distribution: ${{ env.java_distribution }}
	- name: checkout coatjava
	uses: actions/checkout@v4
	with:
	repository: JeffersonLab/coatjava
	ref: development
	- name: build coatjava
	run: ./build-coatjava.sh
	- name: tree
	run: tree
	- name: tar
	run: tar cavf build_coatjava.tar.zst coatjava
	- uses: actions/upload-artifact@v4
	with:
	name: build_coatjava
	retention-days: 1
	path: build*.tar.zst

	# download test data
	#############################################################################

	download_test_data:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: true
	matrix:
	include:
	- { type: detectors, schema: mon }
	- { type: physics, schema: dst }
	env:
	xrootd_file: xroot://sci-xrootd.jlab.org//osgpool/hallb/clas12/validation/recon/${{ matrix.schema }}/validation_files.tar.zst
	steps:
	- uses: actions/cache@v4
	id: cache
	with:
	key: validation_files_${{ matrix.type }}
	path: validation_files.tar.zst
	lookup-only: true
	- name: install dependencies
	if: ${{ steps.cache.outputs.cache-hit != 'true' }}
	run: \|
	sudo apt -y update
	sudo apt -y upgrade
	sudo apt -y install xrootd-client
	- name: download
	if: ${{ steps.cache.outputs.cache-hit != 'true' }}
	run: xrdcp ${{ env.xrootd_file }} ./
	- run: ls -lh .
	if: ${{ steps.cache.outputs.cache-hit != 'true' }}

	# monitoring
	#############################################################################

	run_monitoring:
	needs:
	- build_timelines
	- build_coatjava
	- download_test_data
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	type: [ detectors, physics ]
	steps:
	- name: setup java
	uses: actions/setup-java@v4
	with:
	java-version: ${{ env.java_version }}
	distribution: ${{ env.java_distribution }}
	- name: setup groovy
	uses: wtfjoke/setup-groovy@v2
	with:
	groovy-version: ${{ env.groovy_version }}
	- name: groovy version
	run: groovy --version
	- uses: actions/checkout@v4
	- uses: actions/cache/restore@v4
	with:
	key: validation_files_${{ matrix.type }}
	path: validation_files.tar.zst
	- uses: actions/download-artifact@v4
	with:
	pattern: build_*
	merge-multiple: true
	- name: untar
	run: ls *.tar.zst \| xargs -I{} tar xavf {}
	- name: tree
	run: tree
	- name: run monitoring
	run: bin/run-monitoring.sh -d ${{env.dataset}} --findhipo --series --focus-${{matrix.type}} validation_files
	- name: tree slurm
	run: tree slurm
	- name: tree outfiles
	run: tree outfiles
	- uses: actions/upload-artifact@v4
	with:
	name: slurm_${{ matrix.type }}
	retention-days: 1
	path: slurm
	- uses: actions/upload-artifact@v4
	with:
	name: outfiles_monitoring_${{ matrix.type }}
	retention-days: 14
	path: outfiles

	test_swifjob:
	needs:
	- build_timelines
	- build_coatjava
	- download_test_data
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	type: [ detectors, physics ]
	steps:
	- name: setup java
	uses: actions/setup-java@v4
	with:
	java-version: ${{ env.java_version }}
	distribution: ${{ env.java_distribution }}
	- name: setup groovy
	uses: wtfjoke/setup-groovy@v2
	with:
	groovy-version: ${{ env.groovy_version }}
	- name: groovy version
	run: groovy --version
	- uses: actions/checkout@v4
	- uses: actions/cache/restore@v4
	with:
	key: validation_files_${{ matrix.type }}
	path: validation_files.tar.zst
	- uses: actions/download-artifact@v4
	with:
	pattern: build_*
	merge-multiple: true
	- name: untar
	run: ls *.tar.zst \| xargs -I{} tar xavf {}
	- name: tree
	run: tree
	- name: test monitoring swifjob
	run: \|
	single_rundir=$(find validation_files -mindepth 1 -maxdepth 1 -type d \| head -n1)
	echo "single_rundir = $single_rundir"
	bin/test-swifjob.sh $single_rundir runner --focus-${{ matrix.type }}
	- name: tree runner
	run: tree runner

	# timeline production
	#############################################################################

	run_timelines:
	needs:
	- run_monitoring
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	include:
	- { type: detectors, args: '-n 4 --skip-mya' }
	- { type: physics, args: '' }
	steps:
	- name: setup java
	uses: actions/setup-java@v4
	with:
	java-version: ${{ env.java_version }}
	distribution: ${{ env.java_distribution }}
	- name: setup groovy
	uses: wtfjoke/setup-groovy@v2
	with:
	groovy-version: ${{ env.groovy_version }}
	- name: groovy version
	run: groovy --version
	- uses: actions/checkout@v4
	- uses: actions/download-artifact@v4
	with:
	pattern: outfiles_*
	merge-multiple: true
	path: outfiles
	- uses: actions/download-artifact@v4
	with:
	pattern: build_*
	merge-multiple: true
	- name: untar
	run: ls *.tar.zst \| xargs -I{} tar xavf {}
	- name: tree
	run: tree
	- name: run timelines
	run: bin/run-${{matrix.type}}-timelines.sh -d ${{env.dataset}} ${{matrix.args}}
	- name: tree outfiles
	run: tree outfiles
	- uses: actions/upload-artifact@v4
	with:
	name: outfiles_timelines_${{ matrix.type }}
	retention-days: 14
	path: outfiles

	# timeline deployment
	#############################################################################

	deploy_timelines:
	name: Deployment
	needs:
	- run_timelines
	runs-on: ubuntu-latest
	steps:
	- name: setup groovy
	uses: wtfjoke/setup-groovy@v2
	with:
	groovy-version: ${{ env.groovy_version }}
	- name: groovy version
	run: groovy --version
	- uses: actions/checkout@v4
	- uses: actions/download-artifact@v4
	with:
	pattern: outfiles_*
	merge-multiple: true
	path: outfiles
	- uses: actions/download-artifact@v4
	with:
	pattern: build_*
	merge-multiple: true
	- name: untar
	run: ls *.tar.zst \| xargs -I{} tar xavf {}
	- name: tree outfiles
	run: \|
	rm -r outfiles/${{ env.dataset }}/log
	echo "# Output File Tree" >> $GITHUB_STEP_SUMMARY
	echo '```' >> $GITHUB_STEP_SUMMARY
	tree outfiles \| xargs -0 -I{} echo {} >> $GITHUB_STEP_SUMMARY
	echo '```' >> $GITHUB_STEP_SUMMARY
	- name: deploy
	run: bin/deploy-timelines.sh -d ${{env.dataset}} -c -t web
	- uses: actions/upload-artifact@v4
	with:
	name: web
	retention-days: 14
	path: web

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feat: QADB for RG-A Fa18 #946

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feat: QADB for RG-A Fa18 #946

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