Changes .clean script to suitable python version and directories. Ver…

…y minor comments and syntax updates to fileutil.

.clean_local_install.sh

@@ -18,9 +18,9 @@ EOF
 
 
 
-rm -rf /home/matt/.pyenv/versions/kdb/lib/python3.10/site-packages/kmerdb /home/matt/.pyenv/versions/kdb/lib/python3.10/site-packages/kmerdb-*.egg-info /ffast2/kdb/kmerdb.egg-info /ffast2/kdb/build /ffast2/kdb/dist
-rm -rf /home/matt/.pyenv/versions/3.10.1/envs/kdb/lib/python3.10/site-packages/kmerdb-*
-cd /ffast2/kdb/
+rm -rf /home/matt/.pyenv/versions/kdb/lib/python3.11/site-packages/kmerdb /home/matt/.pyenv/versions/kdb/lib/python3.11/site-packages/kmerdb-*.egg-info /home/matt/Projects/kdb/kmerdb.egg-info /home/matt/Projects/kdb/build /home/matt/Projects/kdb/dist
+rm -rf /home/matt/.pyenv/versions/3.11.7/envs/kdb/lib/python3.11/site-packages/kmerdb-*
+cd /home/matt/Projects/kdb/
 rm -rf dist build kmerdb.egg-info wheelhouse
 cd
 

kmerdb/fileutil.py

@@ -226,7 +226,7 @@ def open(filepath, mode="r", metadata=None, sort:bool=False, slurp:bool=False):
 
 class KDBReader(bgzf.BgzfReader):
     """
-    A class that reads KDB files, potentially just for accessing header metadata, or for reading the entire contents into numpy arrays.
+    A class that reads .kdb files, potentially just for accessing header metadata, or for reading the entire contents into numpy arrays.
     
 
     :ivar filename: str
@@ -757,7 +757,7 @@ def slurp(self, column_dtypes:str="uint64", count_dtypes:str="uint64", frequenci
 
 class KDBWriter(bgzf.BgzfWriter):
     """
-    A wrapper class around Bio.bgzf.BgzfWriter to write a kdb file to disk.
+    A wrapper class around Bio.bgzf.BgzfWriter to write a .kdb file to disk.
 
     :ivar metadata: OrderedDict
     :ivar filename: str