What's Changed
- adds support for H5AD (AnnData) output by with #90
- adds support for Snakemake 8 with in #83
- updates environments to R 4.3 and Bioc 3.18 with #86
- freshens up the Rmd output with #89
- adds a version variable to the Snakefile with #89
Specification Extensions
- configuration YAML: there is now a
output_format
key that takes a list, currently limited to"sce"
(default) and"h5ad"
(experimental). - target definition: targets have two new (optional) keys -
tx_annots_csv
andgene_annots_csv
These are exclusively used by theoutput_format: h5ad
branch of the pipeline.
Full Changelog: v0.4.1...v0.5.0