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Merge branch 'development' of https://github.com/NFDI4Chem/nmrxiv int…
…o remove-studies
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,82 @@ | ||
| <?php | ||
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| namespace App\Console\Commands; | ||
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| use App\Models\Project; | ||
| use App\Models\Study; | ||
| use App\Services\DOI\DOIService; | ||
| use Carbon\Carbon; | ||
| use Illuminate\Console\Command; | ||
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| class UpdateDOI extends Command | ||
| { | ||
| /** | ||
| * The name and signature of the console command. | ||
| * | ||
| * @var string | ||
| */ | ||
| protected $signature = 'nmrxiv:update-projects-dois {operator?} {update-date?}'; | ||
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| /** | ||
| * The console command description. | ||
| * | ||
| * @var string | ||
| */ | ||
| protected $description = 'Update DataCite DOI metadata of all the projects, studies, and datasets updated before or after a given date.'; | ||
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| /** | ||
| * The DOI service instance. | ||
| * | ||
| * @var \App\Services\DOI\DOIService | ||
| */ | ||
| protected $doiService; | ||
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| /** | ||
| * Create a new class instance. | ||
| * | ||
| * @return void | ||
| */ | ||
| public function __construct(DOIService $doiService) | ||
| { | ||
| parent::__construct(); | ||
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| // Assign the DOI service instance | ||
| $this->doiService = $doiService; | ||
| } | ||
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| /** | ||
| * Execute the console command. | ||
| */ | ||
| public function handle() | ||
| { | ||
| // $operator takes values from | ||
| // {'>' : after a certain update date, | ||
| // '<' : before a certain update date, | ||
| // '=' : at a certain update date} | ||
| $operator = $this->argument('operator'); | ||
| $date = $this->argument('update-date'); | ||
| $date = $date ? Carbon::parse($date) : null; | ||
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| // Fetch the projects and samples (studies) based on the date | ||
| $projects = $date ? Project::where('updated_at', $operator, $date)->get() : Project::all(); | ||
| $studies = $date ? Study::where('updated_at', $operator, $date)->get() : Study::all(); | ||
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| // Cover all studies within or without projects | ||
| foreach ($studies as $study) { | ||
| echo $study->identifier."\r\n"; | ||
| foreach ($study->datasets as $dataset) { | ||
| echo $dataset->identifier."\r\n"; | ||
| $dataset->updateDOIMetadata($this->doiService); | ||
| $dataset->addRelatedIdentifiers($this->doiService); | ||
| } | ||
| $study->updateDOIMetadata($this->doiService); | ||
| $study->addRelatedIdentifiers($this->doiService); | ||
| } | ||
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| foreach ($projects as $project) { | ||
| echo $project->identifier."\r\n"; | ||
| $project->updateDOIMetadata($this->doiService); | ||
| $project->addRelatedIdentifiers($this->doiService); | ||
| } | ||
| } | ||
| } |
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