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backup/shiny-server安装和配置.md

@@ -0,0 +1,32 @@
+参考博文[在Ubuntu服务器上配置Shiny应用](https://www.jieandze1314.com/post/cnposts/256/)进行基本的安装和配置。注意 zhoulab 服务器没有将 shiny 加入 sudo 用户，而是直接使用 root 进行相关的 sudo 操作。
+
+shiny server 配置文件内容：
+
+```
+# Instruct Shiny Server to run applications as the user "shiny"
+run_as shiny;
+preserve_logs true;
+app_idle_timeout 0;
+# Define a server that listens on port 3838
+server {
+  listen 3838;
+
+  # Define a location at the base URL
+  location / {
+
+    # Host the directory of Shiny Apps stored in this directory
+    site_dir /srv/shiny-server;
+
+    # Log all Shiny output to files in this directory
+    log_dir /var/log/shiny-server;
+
+    # When a user visits the base URL rather than a particular application,
+    # an index of the applications available in this directory will be shown.
+    directory_index on;
+  }
+}
+``` 
+
+主要是增加了第3行和第4行，其他的没动过。
+
+nginx 的配置参考文章[shiny应用的nginx配置](https://github.com/OncoHarmony-Network/OncoHarmony-Network.github.io/issues/8)。

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"https://github.com/OncoHarmony-Network/OncoHarmony-Network.github.io/issues/6", "commentNum": 0, "description": "## \u6570\u636e\u5e93\r\n\r\n- TCCIA: https://shiny.hiplot.cn/TCCIA/ (http://biotrainee.vip:18888/TCCIA/)\r\n\r\n## \u8ba1\u7b97\u6d41\u7a0b\r\n\r\n- circrna-pipeline: https://github.com/OncoHarmony-Network/circrna-pipeline\u3002", "top": 1, "createdAt": 1701853623, "style": "", "script": "", "createdDate": "2023-12-06", "dateLabelColor": "#A333D0"}, "P7": {"htmlDir": "docs/post/tuan-dui-zi-yuan-lie-biao.html", "label": "\u5e73\u53f0", "labelColor": "#A8E5E5", "postTitle": "\u56e2\u961f\u8d44\u6e90\u5217\u8868", "postUrl": "post/tuan-dui-zi-yuan-lie-biao.html", "postSourceUrl": "https://github.com/OncoHarmony-Network/OncoHarmony-Network.github.io/issues/7", "commentNum": 0, "description": "- Gitea: https://gitea.zhoulab.ac.cn/ \u9700\u8981\u8054\u7cfb\u7ba1\u7406\u5458\u521b\u5efa\uff08\u738b\u8bd7\u7fd4\uff09\uff0c\u4e0d\u652f\u6301 SSH\uff08\u56e0\u4e3a [Docker \u90e8\u7f72](https://docs.gitea.com/installation/install-with-docker)\u7684\uff0c\u7136\u540e\u53c8\u662f\u5185\u90e8\u670d\u52a1\u5668\uff0c\u4e0d\u6e05\u695a\u600e\u4e48\u5904\u7406 SSH\uff0c\u7b49\u5f85\u540e\u7eed\u6210\u5458\u89e3\u51b3\uff09\r\n- RStudio Server \u548c\u5bf9\u5e94\u7684\u670d\u52a1\u5668 zhou, zhou2\uff08\u5982\u6709\u9700\u8981\uff0c\u8bf7\u8054\u7cfb\u5efa\u56fd\u548c\u8bd7\u7fd4\uff09\r\n  - `http://biotrainee.vip:15203/`\r\n  - `http://biotrainee.vip:15213/`\u3002", "top": 0, "createdAt": 1701929682, "style": "", "script": "", "createdDate": "2023-12-07", "dateLabelColor": "#A333D0"}, "P8": {"htmlDir": "docs/post/shiny-ying-yong-de-nginx-pei-zhi.html", "label": "\u8fd0\u7ef4", "labelColor": "#479AD1", "postTitle": "shiny\u5e94\u7528\u7684nginx\u914d\u7f6e", "postUrl": "post/shiny-ying-yong-de-nginx-pei-zhi.html", "postSourceUrl": "https://github.com/OncoHarmony-Network/OncoHarmony-Network.github.io/issues/8", "commentNum": 0, "description": "\u4e3b\u8981\u662f\u5229\u7528 nginx \u5b9e\u73b0\u65b9\u5411\u4ee3\u7406\u5230 shiny-server \u7684\u5bf9\u5e94\u7aef\u53e3\uff0c\u53e6\u5916\u5b9e\u73b0 https \u7684\u9a8c\u8bc1\u8bbf\u95ee\u3002", "top": 0, "createdAt": 1701934750, "style": "", "script": "", "createdDate": "2023-12-07", "dateLabelColor": "#A333D0"}, "P9": {"htmlDir": "docs/post/Web-zhuan-ye-kai-fa-xue-xi-lu-jing.html", "label": "\u5b66\u4e60", "labelColor": "#C31D0B", "postTitle": "Web\u4e13\u4e1a\u5f00\u53d1\u5b66\u4e60\u8def\u5f84", "postUrl": "post/Web-zhuan-ye-kai-fa-xue-xi-lu-jing.html", "postSourceUrl": "https://github.com/OncoHarmony-Network/OncoHarmony-Network.github.io/issues/9", "commentNum": 0, "description": "\u5173\u4e8e Shiny\uff0c\u6211\u4e4b\u524d\u5199\u8fc7\u4e00\u4e2a\u535a\u5ba2\uff1a[Shiny \u5f00\u53d1\u5b66\u4e60\u8def\u5f84](https://shixiangwang.github.io/posts/2023-09-13-shiny-learning-path-for-bioinformatics/)\r\n\r\n\u8fd9\u91cc\u4e3b\u8981\u5206\u4eab\u4e0b\u5251\u5cf0\u63d0\u4f9b\u7684\u5b66\u4e60\u8def\u5f84\uff0c\u53ef\u4f9b\u56e2\u961f\u5185\u7684\u6210\u5458\u8fdb\u884c\u53c2\u8003\u5b66\u4e60\u3002", "top": 0, "createdAt": 1702043455, "style": "", "script": "", "createdDate": "2023-12-08", "dateLabelColor": "#A333D0"}, "P10": {"htmlDir": "docs/post/shiny-server-an-zhuang-he-pei-zhi.html", "label": "\u8fd0\u7ef4", "labelColor": "#479AD1", "postTitle": "shiny-server\u5b89\u88c5\u548c\u914d\u7f6e", "postUrl": "post/shiny-server-an-zhuang-he-pei-zhi.html", "postSourceUrl": "https://github.com/OncoHarmony-Network/OncoHarmony-Network.github.io/issues/10", "commentNum": 0, "description": "\u53c2\u8003\u535a\u6587[\u5728Ubuntu\u670d\u52a1\u5668\u4e0a\u914d\u7f6eShiny\u5e94\u7528](https://www.jieandze1314.com/post/cnposts/256/)\u8fdb\u884c\u57fa\u672c\u7684\u5b89\u88c5\u548c\u914d\u7f6e\u3002", "top": 0, "createdAt": 1702135691, "style": "", "script": "", "createdDate": "2023-12-09", "dateLabelColor": "#A333D0"}}, "singeListJson": {"P1": {"htmlDir": "docs/about.html", "label": "about", "labelColor": "#FC9D81", "postTitle": "About", "postUrl": "post/About.html", "postSourceUrl": "https://github.com/OncoHarmony-Network/OncoHarmony-Network.github.io/issues/1", "commentNum": 0, "description": "OncoHarmony Network is a dynamic collaborative platform dedicated to advancing the frontier of cancer immunotherapy. Bringing together diverse teams from leading universities and research institutions, our network is committed to the exploration, mining, and integration of multi-omics data in the realm of cancer research. With a focus on fostering synergy among experts in the field, OncoHarmony Network aims to construct a comprehensive resource hub and cutting-edge tools for unraveling the complexities of tumor-immune interactions. Through collective knowledge and interdisciplinary collaboration, we strive to accelerate breakthroughs in the understanding and development of effective cancer therapies. \r\n\r\nCurrently led by _Dr. Shixiang Wang_ and _Dr. Jian-Guo Zhou_.\r\n\r\n- GitHub: https://github.com/OncoHarmony-Network\u3002", "top": 0, "createdAt": 1701397208, "style": "", "script": "", "createdDate": "2023-12-01", "dateLabelColor": "#A333D0"}}, "prevUrl": "disabled", "nextUrl": "disabled"}

docs/index.html

@@ -110,6 +110,17 @@ <h1>
         <span class="Label LabelName" style="background-color:#98A8FA"><object><a style="color:#fff" href="/tag.html#公告">公告</a></object></span>
         <span class="Label LabelTime" style="background-color:#A333D0">2023-12-01</span>
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+</a><a class="SideNav-item d-flex flex-items-center flex-justify-between" href="post/shiny-server-an-zhuang-he-pei-zhi.html">
+    <div class="d-flex flex-items-center">
+        <svg class="SideNav-icon octicon" style="witdh:16px;height:16px"><path class="svgTop0" d=""></path>
+        </svg>
+        <span class="listTitle">shiny-server安装和配置</span>
+    </div>
+    <div class="listLabels">
+
+        <span class="Label LabelName" style="background-color:#479AD1"><object><a style="color:#fff" href="/tag.html#运维">运维</a></object></span>
+        <span class="Label LabelTime" style="background-color:#A333D0">2023-12-09</span>
+    </div>
 </a><a class="SideNav-item d-flex flex-items-center flex-justify-between" href="post/Web-zhuan-ye-kai-fa-xue-xi-lu-jing.html">
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