add alpha

OpenGene · May 4, 2016 · 119aace · 119aace
1 parent a348671
commit 119aace
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/qualitycontrol.py b/qualitycontrol.py
@@ -94,7 +94,7 @@ def plotQuality(self, filename):
         plt.ylabel('Quality')
         plt.xlabel('Base')
         for base in ALL_BASES:
-            plt.plot(x, self.baseMeanQual[base][0:self.readLen], color = colors[base], label=base)
+            plt.plot(x, self.baseMeanQual[base][0:self.readLen], color = colors[base], label=base, alpha=0.3)
         plt.plot(x, self.meanQual[0:self.readLen], color = 'black', label = 'mean')
         plt.legend(loc='upper right', ncol=5)
         plt.savefig(filename)
@@ -109,7 +109,7 @@ def plotContent(self, filename):
         plt.ylabel('Percents')
         plt.xlabel('Base')
         for base in ALL_BASES:
-            plt.plot(x, self.percents[base][0:self.readLen], color = colors[base], label=base)
+            plt.plot(x, self.percents[base][0:self.readLen], color = colors[base], label=base, alpha=0.5)
         plt.plot(x, self.gcPercents[0:self.readLen], color = 'black', label='GC')
         plt.legend(loc='upper right', ncol=5)
         plt.savefig(filename)