hierarchy views #790
hierarchy views #790
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| File Pattern | Change Summary |
|---|---|
res/cmake/*.cmake |
Updated CMake configuration, fixing a typo and reflecting project structure reorganization. |
src/amr/.../field_data.hpp, src/core/data/field/field.hpp |
Updated field data handling, including assertions and pointer usage. Field class now inherits from NdArrayView. |
src/amr/.../*.hpp |
General overhaul of template parameters to use GridT or Grid_t and improved resource management. Introduced new solver classes and strategies. |
src/core/data/grid/*.hpp, src/core/data/ions/*.hpp, src/core/data/ndarray/*.hpp |
Introduced Grid class and updated related classes with new member variables and methods. Enhanced NdArrayView functionalities. |
src/core/data/electrons/*.hpp, src/core/data/tensorfield/*.hpp, src/core/data/vecfield/*.hpp |
Adjustments to electron and field classes, including new methods and reorganization. |
src/core/.../*.hpp, src/core/utilities/*.hpp |
Various enhancements and code cleanups, including new template structs and utilities. |
src/diagnostic/.../fluid.hpp, src/phare_core.hpp, src/phare_solver.hpp, src/simulator/.../phare_types.hpp |
Updated diagnostic types and core type declarations to align with new changes. |
tests/amr/.../*, tests/core/data/*, tests/core/numerics/* |
Reflected changes from Field to Grid in tests, updated type aliases, and included new headers. |
tests/initializer/*.hpp |
Simplified initialization functions by removing unnecessary parameters. |
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Review Status
Actionable comments generated: 18
Configuration used: .coderabbit.yaml
Files selected for processing (57)
- res/cmake/dep.cmake (1 hunks)
- res/cmake/test.cmake (1 hunks)
- src/amr/data/field/field_data.hpp (2 hunks)
- src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp (3 hunks)
- src/amr/multiphysics_integrator.hpp (5 hunks)
- src/amr/physical_models/hybrid_model.hpp (2 hunks)
- src/amr/resources_manager/field_resource.hpp (1 hunks)
- src/amr/resources_manager/resources_manager.hpp (2 hunks)
- src/amr/solvers/solver.hpp (5 hunks)
- src/amr/solvers/solver_mhd.hpp (2 hunks)
- src/amr/solvers/solver_ppc.hpp (6 hunks)
- src/amr/solvers/solver_ppc_model_view.hpp (1 hunks)
- src/amr/tagging/default_hybrid_tagger_strategy.hpp (1 hunks)
- src/amr/tagging/hybrid_tagger.hpp (1 hunks)
- src/core/data/electrons/electrons.hpp (9 hunks)
- src/core/data/field/field.hpp (1 hunks)
- src/core/data/grid/grid.hpp (1 hunks)
- src/core/data/grid/gridlayout.hpp (6 hunks)
- src/core/data/ions/ion_population/ion_population.hpp (4 hunks)
- src/core/data/ions/ions.hpp (2 hunks)
- src/core/data/ndarray/ndarray_vector.hpp (5 hunks)
- src/core/data/vecfield/vecfield.hpp (4 hunks)
- src/core/models/hybrid_state.hpp (1 hunks)
- src/core/numerics/ampere/ampere.hpp (1 hunks)
- src/core/numerics/faraday/faraday.hpp (1 hunks)
- src/core/numerics/ohm/ohm.hpp (1 hunks)
- src/core/utilities/box/box.hpp (1 hunks)
- src/core/utilities/types.hpp (3 hunks)
- src/diagnostic/detail/types/fluid.hpp (1 hunks)
- src/phare_core.hpp (3 hunks)
- src/simulator/phare_types.hpp (1 hunks)
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp (3 hunks)
- tests/amr/data/field/copy_pack/field_data_test_param.hpp (2 hunks)
- tests/amr/data/field/geometry/test_field_geometry.cpp (2 hunks)
- tests/amr/data/field/refine/test_field_refine.cpp (1 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp (2 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp (1 hunks)
- tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (2 hunks)
- tests/amr/data/field/variable/test_field_variable.cpp (2 hunks)
- tests/amr/models/test_models.cpp (1 hunks)
- tests/amr/resources_manager/CMakeLists.txt (1 hunks)
- tests/amr/resources_manager/test_resources_manager.cpp (2 hunks)
- tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp (1 hunks)
- tests/amr/tagging/test_tagging.cpp (1 hunks)
- tests/core/data/electrons/test_electrons.cpp (10 hunks)
- tests/core/data/field/test_field.hpp (2 hunks)
- tests/core/data/grid/CMakeLists.txt (1 hunks)
- tests/core/data/grid/test_grid.cpp (9 hunks)
- tests/core/data/gridlayout/gridlayout_base_params.hpp (1 hunks)
- tests/core/data/gridlayout/gridlayout_deriv.hpp (4 hunks)
- tests/core/data/gridlayout/gridlayout_laplacian.hpp (4 hunks)
- tests/core/data/ion_population/test_ion_population.cpp (1 hunks)
- tests/core/data/ions/test_ions.cpp (2 hunks)
- tests/core/data/vecfield/test_main.cpp (5 hunks)
- tests/core/numerics/ampere/test_main.cpp (6 hunks)
- tests/core/numerics/faraday/test_main.cpp (6 hunks)
- tests/core/numerics/interpolator/test_main.cpp (8 hunks)
Files not processed due to max files limit (2)
- tests/core/numerics/ion_updater/test_updater.cpp
- tests/core/numerics/ohm/test_main.cpp
Files skipped from review due to trivial changes (3)
- res/cmake/dep.cmake
- tests/amr/resources_manager/CMakeLists.txt
- tests/core/data/grid/CMakeLists.txt
Additional comments: 163
res/cmake/test.cmake (1)
- 10-14: The changes to the
add_subdirectorycommands align with the PR's objective to shift fromFieldtoGrid. This is consistent with the broader changes across the codebase as described in the summary.src/amr/data/field/field_data.hpp (2)
89-91: The change from
getVectortogetDoubleArraywith an assertion forfield.vector().size()is a good optimization to avoid memory reallocation. However, ensure thatfield.vector()is properly initialized before this method is called, as the assertion only checks for size, not for nullity.314-314: The change in the return type of
getPointertoauto*leverages C++ type inference and is a good use of modern C++ features. Ensure that all usages ofgetPointerare checked for compatibility with this change.src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp (5)
49-88: The changes to the
FieldUserstruct are consistent with the PR objectives and summary, including the renaming of the template parameter and the addition of thecopyDatamethod.95-125: The updates to the
HybridHybridMessengerStrategyclass, including the introduction of new type aliases and changes in template parameters, align with the PR objectives and summary.49-88: Verify that all instances of
FieldUserin the codebase have been updated to use the newGridT::field_typeinstead ofFieldT*.95-125: Verify that the
HybridHybridMessengerStrategyclass and its methods are correctly used with the new template parameters and type aliases throughout the codebase.1006-1010: Verify that the
NiOldUser_member ofHybridHybridMessengerStrategyis correctly updated and used throughout the codebase with the newFieldUser<GridT>andGridT::field_type*.src/amr/multiphysics_integrator.hpp (5)
580-580: The addition of
model_views_as a member variable aligns with the summary.808-808: The addition of the
getModelView_method aligns with the summary.349-352: The logic for populating
model_views_during level initialization is not mentioned in the summary. This is a significant change as it affects how model views are managed during the initialization of levels.371-372: The logic for populating
model_views_during reset hierarchy configuration is not mentioned in the summary. This is a significant change as it affects how model views are managed when the hierarchy configuration is reset, especially after a restart.499-500: The logic for using
model_views_during the advance level is not mentioned in the summary. This is a significant change as it affects how model views are used when advancing the level.src/amr/physical_models/hybrid_model.hpp (1)
- 33-33: The summary mentions the removal of the
gridlayout_typealias, but it is still present in the code. Please clarify if this alias is indeed removed or if it should remain.src/amr/resources_manager/field_resource.hpp (2)
17-18: The changes from
field_typetogrid_typeforpatch_data_typeandvariable_typeare consistent with the PR's objectives to standardize the use ofGridas the primary data structure for grid-related operations.19-19: The
internal_type_ptrstill usesfield_type. Iffield_typehas been deprecated in favor ofgrid_type, this line may need to be updated to reflect the new type. Please verify iffield_typeis still a relevant type within the context ofResourcesUser.src/amr/resources_manager/resources_manager.hpp (3)
574-574: The summary indicates that the
[[maybe_unused]]attribute was removed from theallocate_function signature, but the attribute is not present in the provided hunk. Please verify if the summary is accurate or if the attribute was indeed removed.574-574: The change to uncomment the
ResourcesUserparameter in theallocate_function signature is correctly reflected in the hunk.322-328: The summary does not mention any changes to the
restart_patch_data_idsfunction, but the hunk shows modifications to this function. Please verify if the summary should include these changes.src/amr/solvers/solver.hpp (5)
19-25: The addition of the
ISolverModelViewinterface class is confirmed and appears to be correctly placed within thePHARE::solvernamespace. The class is minimal, with a virtual default destructor, which is a common practice for interface classes in C++ to ensure proper cleanup of derived objects.47-49: The addition of type aliases
patch_t,level_t, andhierarchy_tin theISolverclass aligns with the summary and is a common practice to simplify the use of template types within the class.89-92: The
advanceLevelmethod signature has been updated to accepthierarchy_t const& hierarchy,int const levelNumber, andISolverModelView& viewas parameters. This change is consistent with the summary and reflects the integration of the newISolverModelViewinterface.102-103: The
allocatemethod signature has been updated to acceptIPhysicalModel<AMR_Types>& modelandpatch_t& patchas parameters. This change is consistent with the summary and reflects the use of the new type aliaspatch_t.113-114: The addition of the
make_viewmethod to theISolverclass is confirmed. This pure virtual method is consistent with the summary and is designed to return astd::shared_ptrto anISolverModelView. This method will enforce that derived classes provide an implementation for creating views.src/amr/solvers/solver_mhd.hpp (4)
17-19: The addition of type aliases
patch_t,level_t, andhierarchy_tis a good practice for code readability and maintainability, as it allows for easier refactoring and understanding of the types used within the class.41-42: The update of the
allocatemethod signature to use thepatch_ttype alias is consistent with the changes and improves type consistency within the class.46-49: The update of the
advanceLevelmethod signature to use thehierarchy_ttype alias andISolverModelViewinterface is consistent with the changes and improves type consistency and interface abstraction within the class.53-57: The
make_viewmethod is not implemented and throws a runtime error. Ensure that this is intentional and that there are plans to implement this method in the future, or consider providing a more descriptive error message or documentation indicating that it is not supported in theSolverMHDclass.src/amr/solvers/solver_ppc.hpp (7)
76-76: The summary does not mention changes to the
SolverPPCconstructor, but the hunk shows modifications to the constructor's initialization list. Please ensure that the summary reflects all significant changes.79-79: The summary does not mention changes to the
SolverPPCdestructor, but the hunk shows the explicit default of the destructor. Please ensure that the summary reflects all significant changes.187-187: The summary does not mention changes to the
fillMessengerInfomethod, but the hunk shows changes to this method. Please ensure that the summary reflects all significant changes.138-138: The summary does not mention changes to the
registerResourcesandallocatemethods, but the hunks show changes to these methods. Please ensure that the summary reflects all significant changes.261-261: The summary does not mention changes to the
predictor1_,predictor2_,corrector_, andaverage_methods, but the hunks show changes to these methods. Please ensure that the summary reflects all significant changes.401-401: The summary does not mention changes to the
_debug_log_move_ionsmethod, but the hunks show changes to this method. Please ensure that the summary reflects all significant changes.433-433: The summary does not mention changes to the
moveIons_method, but hunk 5 shows changes to this method. Please ensure that the summary reflects all significant changes.src/amr/solvers/solver_ppc_model_view.hpp (1)
- 1-298: The code introduces several transformers and a model view for a particle-in-cell model, which encapsulate core numerical methods and manage simulation state. The code is complex but appears to be written with efficiency in mind, using templates and assertions appropriately. There are no obvious logic errors or performance issues. However, the summary mentions a significant overhaul of the codebase related to the use of
Gridtypes, which is not shown in this hunk. The provided code focuses on the model view and transformers, which do not directly show the use ofGridtypes. The summary also does not mention the transformers or the model view, which are significant parts of the provided code.src/amr/tagging/default_hybrid_tagger_strategy.hpp (1)
- 43-45: The instantiation of
core::NdArrayViewcorrectly reflects the changes mentioned in the summary, with the third template parameter (buffer type) removed.src/amr/tagging/hybrid_tagger.hpp (1)
- 90-93: The instantiation of
NdArrayViewhas been correctly updated to reflect the new template parameter structure, removing thePointertemplate parameter. This change is consistent with the summary provided.src/core/data/field/field.hpp (3)
8-9: The inclusion of
<vector>and<algorithm>headers is appropriate given the use ofstd::transformin theaveragefunction.22-53: The
Fieldclass template has been updated correctly with theusing Super = NdArrayImpl;statement, appropriate constructor, and member functions withautoreturn types.58-68: The
averagefunction is a new addition and is implemented correctly usingstd::transformto average two fields.src/core/data/grid/grid.hpp (5)
20-75: The introduction of the
Gridclass template aligns with the PR's objective to shift from usingFieldtoGrid. The class is well-structured, providing necessary constructors and accessors, and encapsulates theFieldtype within it. This encapsulation is consistent with the summary's mention of a pervasive change fromFieldtoGrid.32-36: The
Gridclass is explicitly non-copyable, which is a design decision likely made to prevent expensive copies of potentially large data structures. This is a good practice for performance reasons, especially when dealing with large numerical grids.81-91: The
averagefunction correctly computes the average of twoGridobjects and stores the result in a thirdGridobject. The use ofstd::transformwithstd::plus<double>()followed by a transform to multiply by 0.5 is an efficient way to perform this operation.61-66: The
copyDatamethod includes an assertion to ensure that the source and destination sizes are equal before copying data. This is a good practice to prevent buffer overflows or underflows.68-70: The
operator&overloads return the address of thefield_member, which could be misleading as it's not the address of theGridobject itself. The comment in the code acknowledges this potential confusion but suggests it's for convenience. It's important to ensure that this does not lead to misuse in the codebase.src/core/data/grid/gridlayout.hpp (6)
464-473: The summary does not mention any changes to the
fieldNodeCoordinatesfunction, but the hunks show a new template functionfieldNodeCoordinatesthat takes aField_ttype and indexes. This seems to be an additional change that was not captured in the summary.958-965: The summary does not mention any changes to the
fieldCenteringfunction, but the hunks show a new template functionfieldCenteringthat takes aField_ttype and aDirection. This seems to be an additional change that was not captured in the summary.328-331: The summary does not mention any changes to the
physicalStartIndexfunction, but the hunks show a new template functionphysicalStartIndexthat takes aField_ttype and aDirection. This seems to be an additional change that was not captured in the summary.370-373: The summary does not mention any changes to the
physicalEndIndexfunction, but the hunks show a new template functionphysicalEndIndexthat takes aField_ttype and aDirection. This seems to be an additional change that was not captured in the summary.407-412: The summary does not mention any changes to the
ghostStartIndexfunction, but the hunks show a new template functionghostStartIndexthat takes aField_ttype and aDirection. This seems to be an additional change that was not captured in the summary.449-452: The summary does not mention any changes to the
ghostEndIndexfunction, but the hunks show a new template functionghostEndIndexthat takes aField_ttype and aDirection. This seems to be an additional change that was not captured in the summary.src/core/data/ions/ion_population/ion_population.hpp (5)
24-30: The addition of
using grid_type = typename VecField::grid_type;aligns with the PR's objective to shift fromFieldtoGridas a fundamental data structure. This change should be verified across the codebase to ensure consistency.151-157: The use of
NO_DISCARDonlevelGhostParticlesOldis consistent with best practices to ensure the return value is not ignored unintentionally.170-180: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [161-175]
The
levelGhostParticlesNewfunctions are correctly marked withNO_DISCARDand provide both const and non-const access to the particles, which is a common pattern to maintain const-correctness.
27-30: The
IonPopulationclass now includes bothgrid_typeandfield_typedeclarations, which may be part of a transitional phase or dual support for bothFieldandGridtypes. This should be verified for consistency and to understand the intended usage within the broader codebase.151-161: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [24-198]
The changes to the
IonPopulationclass, including the addition ofgrid_typeand updates to member functions, are minimal and efficient, aligning with the user's preference for such code practices.src/core/data/ions/ions.hpp (5)
26-32: The addition of
usingdeclarations forgrid_type,field_type, andvecfield_typeis a good practice as it simplifies the type definitions within the class and makes the code more readable.40-41: The explicit definition of default move and copy constructors ensures that the
Ionsclass has well-defined copy and move semantics, which is particularly important for classes that manage resources or have complex state.37-37: The addition of the
dimensionstatic constexpr variable is not mentioned in the summary. This change could have implications on the usage of theIonsclass, as it introduces a new compile-time constant that may be used elsewhere in the codebase.44-44: The constructor for the
Ionsclass is not mentioned in the summary. Changes to constructors are significant as they affect how instances of the class are created and initialized.37-44: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [26-44]
The summary does not mention the
computeDensity,computeMassDensity, andcomputeBulkVelocitymethods, which are crucial for the functionality of theIonsclass. Any changes to these methods should be documented as they could affect the behavior of the class.src/core/data/ndarray/ndarray_vector.hpp (5)
131-150: The
NdArrayViewclass has been refactored to remove thePointertemplate parameter and now uses apointer_typealias. Ensure that all usages ofNdArrayViewthroughout the codebase are updated to reflect this change.184-189: The
fill_frommethod is correctly implemented to copy data from anotherNdArrayViewinstance, with a size check to prevent buffer overflows.191-197: The addition of
begin,end, andzeromethods toNdArrayViewfollows standard practices for container-like classes and enhances the usability of the class.244-249: The
NdArrayVectorclass is not mentioned in the summary, but it is present in the code. It appears to be correctly implemented and consistent with the changes made toNdArrayView.181-203: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [131-202]
The changes to
NdArrayViewalign with the user PhilipDeegan's preference for minimal and efficient code by simplifying the class template and adding utility methods without introducing unnecessary complexity.src/core/data/vecfield/vecfield.hpp (4)
23-33: The changes to the
VecFieldclass template correctly reflect the shift fromNdArrayImpltoGrid_tand the introduction ofdimensionandfield_typeas per the PR objectives and summary.127-130: The
getComponentmethod's return type has been updated toauto&, which is a modern C++ practice that allows the compiler to deduce the return type.144-147: Similarly, the const version of
getComponentnow returnsauto const&, maintaining consistency with the non-const version and modern C++ practices.36-40: The VecField class has a deleted default constructor and copy assignment operator, which is a design choice likely intended to prevent misuse.
src/core/models/hybrid_state.hpp (1)
- 75-83: The summary mentions the addition of a variable
Jto the returned tuple ofgetCompileTimeResourcesUserList, but the hunk shows thatJwas already included in the tuple in both theconstand non-constversions of the method. This seems to be an inconsistency in the summary. Additionally, the method has been overloaded to provide a non-constversion, which is not mentioned in the summary. Verify if the removal ofconstfrom the method signature and the addition of a non-constversion are intentional and correctly implemented.src/core/numerics/ampere/ampere.hpp (1)
- 40-48: The
opmethod assignslayoutto the class memberlayout_before invoking the(*this)(B, J)method. Ensure that this does not introduce data races ifAmpereinstances are used concurrently in a multithreaded context.src/core/numerics/faraday/faraday.hpp (1)
- 50-60: The implementation of the new
operator()method in theFaradayclass template appears to be correct and logically sound. It iterates through the providedstatescollection, updates thelayout_member, and calls the otheroperator()method with the appropriate arguments.src/core/numerics/ohm/ohm.hpp (3)
54-63: The addition of the new
operator()method in theOhmclass template is correctly implemented and matches the description provided in the summary.65-66: The member variables
eta_andnu_remain unchanged as indicated in the summary.60-60: Please verify that the assignment of
layoutto thelayout_member variable is necessary and not redundant, in line with your preference for minimal and efficient code.src/core/utilities/box/box.hpp (1)
- 179-184: The summary indicates the removal of a
constincrement operator frombox_iterator, but the provided hunk shows that the increment operator (operator++) is present and is not marked asconst. This discrepancy suggests that the summary may be inaccurate or that the hunk is showing a different state of the code than described.src/core/utilities/types.hpp (3)
72-76: The addition of the
Tuplealias inside thetype_liststruct is correctly implemented and follows C++ best practices for type aliasing.327-343: The modification of the
all,any, andnonefunctions to beconstexpris correctly implemented and enhances compile-time evaluation capabilities.358-459: The new template functions and metafunctions for compile-time iteration and tuple manipulation are correctly implemented and follow modern C++ idioms for metaprogramming.
src/diagnostic/detail/types/fluid.hpp (1)
- 192-197: The update to the
writeDSlambda function to usefield.data()instead of&(*field.begin())simplifies the data access pattern and is consistent with modern C++ best practices. This change should also be more efficient, as it avoids the need to dereference an iterator, which aligns with the user's preference for minimal and efficient code.src/phare_core.hpp (3)
5-5: The addition of the
grid.hppinclude is consistent with the changes described in the summary, which indicates a shift towards usingGridas a fundamental data structure.38-46: The introduction of
Grid_tandArrayView_tand their use in the declaration ofVecField_tandField_tis consistent with the shift towards a grid-centric approach as described in the summary.50-55: The introduction of
ParticleArray_tandParticleSoA_tand their use in the declaration ofMaxwellianParticleInitializer_tandIonPopulation_talign with the refactoring efforts to support the new grid-based data structures.src/simulator/phare_types.hpp (1)
- 18-24: The addition of
Grid_tas a type alias within thePHARE_Typesstruct is consistent with the existing structure and naming conventions of the codebase.tests/amr/data/field/coarsening/test_linear_coarsen.hpp (3)
5-11: The inclusion of
"core/data/grid/grid.hpp"and related grid headers aligns with the PR's objective to shift fromFieldtoGridas the fundamental data structure.55-60: The update from
FieldtoGridin theEMDatastruct is consistent with the PR's objective to standardize the use ofGrid.91-97: The update from
FieldtoGridin theFieldCoarsenTestDatastruct is consistent with the PR's objective to standardize the use ofGrid.tests/amr/data/field/copy_pack/field_data_test_param.hpp (2)
15-25: The inclusion of the new header
"core/data/grid/grid.hpp"and the changes fromFieldtoGridare consistent with the PR's objectives to shift from usingFieldtoGridas a fundamental data structure.281-284: The renaming of
Field1Dto useGridinstead ofFieldaligns with the broader changes in the codebase as described in the PR summary. This change is correctly reflected in the type aliases forFieldDataTest1DOrder1andFieldDataTest1DOrder2.tests/amr/data/field/geometry/test_field_geometry.cpp (2)
11-15: The addition of the include statement for "core/data/grid/grid.hpp" aligns with the changes described in the summary.
35-35: The modification of the type alias
Field1DfromFieldtoGridis consistent with the summary and reflects the broader refactoring effort to standardize the use ofGridas the primary data structure for grid-related operations.tests/amr/data/field/refine/test_field_refine.cpp (1)
- 78-84: The change from
FieldtoGridin the type aliasFieldTis consistent with the PR's objective to transition to usingGridas the fundamental data structure for grid-related entities. This change should be verified across the codebase to ensure that all references and usages ofFieldTare updated accordingly.tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp (1)
- 22-23: The change from
FieldtoGridin theALinearFieldRefineTestclass is consistent with the overall PR objective of shifting fromFieldtoGridas the fundamental data structure. This change should be verified across the codebase to ensure that all instances whereFieldwas used are updated accordingly.tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp (1)
- 6-11: The inclusion of "core/data/grid/grid.hpp" is consistent with the PR's objective of shifting from
FieldtoGridas a fundamental data structure. Ensure that the new grid functionality is integrated properly throughout the test cases.tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (2)
15-18: The changes in the header files and the associated namespace usage are consistent with the PR's objective to shift from
FieldtoGrid. This aligns with the broader refactoring effort across the codebase.50-52: The update of the type alias
FieldNDfromFieldtoGridis consistent with the PR's objective to standardize the use ofGridas the primary data structure for grid-related operations.tests/amr/data/field/variable/test_field_variable.cpp (2)
8-15: The changes in the file include the removal of the
field.hppinclude and the addition ofgrid.hpp, which aligns with the PR's objective to shift fromFieldtoGrid. This is a necessary change to reflect the new data structure usage.51-53: The type alias
FieldVarhas been correctly updated to useGridin place ofField, which is in line with the PR's goal of refactoring the codebase to useGridas the fundamental data structure for grid-related entities.tests/amr/models/test_models.cpp (1)
- 29-49: The changes in type aliases and class definitions reflect the shift to a grid-based simulation structure, aligning with the PR's objective to standardize the use of
Gridas the primary data structure for grid-related operations. The code appears to be correctly updated to use the newGridand related types, such asVecField1D,GridImplYee1D,ParticleArray1D, etc. This should ensure consistency across the codebase, provided that all references to these entities are updated accordingly.tests/amr/resources_manager/test_resources_manager.cpp (2)
5-11: The addition of
#include "core/data/grid/grid.hpp"is consistent with the changes described in the summary, indicating the introduction of theGridclass and its usage in the codebase.32-48: The changes in type aliases from
NdArrayVector<1>toGrid1Dand related updates are consistent with the summary, reflecting the shift to usingGridas the primary data structure for grid-related operations.tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp (2)
31-42: The constructor changes correctly initialize class members using the
inputFileparameter.47-79: The
initmethod changes correctly create and initialize a new patch level within the hierarchy.tests/amr/tagging/test_tagging.cpp (1)
- 164-164: The type alias change from
FieldtoGrid_taligns with the PR's objective to standardize the use ofGridas the primary data structure for grid-related operations.tests/core/data/electrons/test_electrons.cpp (8)
5-8: The inclusion of
grid.hppaligns with the PR's objective to shift fromFieldtoGridas a fundamental data structure.20-20: The addition of
<string_view>suggests the use of string views for potential performance benefits in string handling.134-136: The changes to type aliases like
GridNDandVecFieldNDreflect the shift to usingGridas the primary data structure.162-178: The addition of the
_ionstemplate function likely improves modularity and reusability of ion initialization logic.181-189: The addition of the
_Jtemplate function likely improves modularity and reusability of current density (J) initialization logic.142-204: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [192-223]
The modifications in the
ElectronsTestconstructor to initialize member variables with the newGridtypes and functions demonstrate the integration of the new grid-based approach.
235-238: The
filllambda function has been updated to use the new grid types, which is consistent with the PR's objective.466-466: The addition of
GridYeewithin theThatElectronsVelocityEqualIonVelocityMinusJtest case is consistent with the changes made throughout the codebase to use the newGridtypes.tests/core/data/field/test_field.hpp (2)
7-7: The addition of the include statement for "core/data/ndarray/ndarray_vector.hpp" is noted and seems to be in line with the changes made to the function implementations that now use
NdArrayView.188-193: The function
testhas been updated to use a new template parameterField1instead ofNdArrayImpl. This change aligns with the PR's objective of standardizing the use ofGridas the primary data structure for grid-related operations.tests/core/data/grid/test_grid.cpp (13)
5-7: The inclusion of the new
grid.hppheader and theNdArrayVectorclass fromndarray_vector.hppaligns with the PR's objective to shift fromFieldtoGrid. This change is consistent with the summary provided.15-26: The renaming of
GenericField1DtoGenericGrid1Dand the change of the member variableffromFieldtoGridtype are consistent with the PR's objectives and the summary provided.30-42: The renaming of
GenericField2DtoGenericGrid2Dand the change of the member variableffromFieldtoGridtype are consistent with the PR's objectives and the summary provided.13-53: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [46-59]
The renaming of
GenericField3DtoGenericGrid3Dand the change of the member variableffromFieldtoGridtype are consistent with the PR's objectives and the summary provided.
63-69: The test suite declarations using the new
GenericGrid1D,GenericGrid2D, andGenericGrid3Dclasses are consistent with the changes made in the class definitions and the PR's objectives.73-86: The test cases have been updated to reflect the new class names and member variable types, which is consistent with the PR's objectives and the summary provided.
90-107: The modifiability tests for the
Gridobjects in 1D, 2D, and 3D are consistent with the PR's objectives and the summary provided.112-131: The read-only tests for the
Gridobjects in 1D, 2D, and 3D are consistent with the PR's objectives and the summary provided.138-167: The tests for returning the name and physical quantity of the
Gridobjects in 1D, 2D, and 3D are consistent with the PR's objectives and the summary provided.135-180: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [173-198]
The assignment tests for
Gridobjects in 1D, 2D, and 3D usingcopyDatamethod are consistent with the PR's objectives and the summary provided.
246-251: The test for averaging
Gridobjects in 1D is consistent with the PR's objectives and the summary provided.275-281: The test for averaging
Gridobjects in 2D is consistent with the PR's objectives and the summary provided.306-316: The test for averaging
Gridobjects in 3D is consistent with the PR's objectives and the summary provided.tests/core/data/gridlayout/gridlayout_base_params.hpp (1)
- 17-41: The changes to the
GridLayoutTestParamstruct correctly reflect the shift from usingFieldtoGrid_tas indicated in the summary. TheGrid_ttype alias is well-defined, and thefieldmember andmakeIt_method have been updated to use this new type. This aligns with the PR's objective of standardizing the use ofGridas the primary data structure for grid-related operations.tests/core/data/gridlayout/gridlayout_deriv.hpp (3)
27-31: The change from
FieldtoGridfor theByandEzvariables in thea1DDerivativeclass is consistent with the overall PR objective of shifting toGridas a fundamental data structure.47-51: The change from
FieldtoGridfor theByandEzvariables in thea2DDerivativeclass aligns with the PR's goal of standardizing the use ofGrid.67-71: The update from
FieldtoGridfor theByandEzvariables in thea3DDerivativeclass is in line with the PR's intent to useGridfor grid-related operations.tests/core/data/gridlayout/gridlayout_laplacian.hpp (3)
25-30: The change from
FieldtoGridforJx,Jy, andJzvariables in thea1DLaplacianclass is consistent with the overall PR objective of shifting toGridas a fundamental data structure. This change should be reflected in all related code that interacts with these variables.47-52: The update from
FieldtoGridforJx,Jy, andJzin thea2DLaplacianclass aligns with the changes made in thea1DLaplacianclass and the PR's broader goal of standardizing the use ofGrid. Ensure that any logic that operates on these variables is updated accordingly.69-74: The replacement of
FieldwithGridforJx,Jy, andJzin thea3DLaplacianclass is in line with the changes in the other Laplacian classes and supports the PR's intent to useGridas the primary data structure. This should be checked for consistency across the entire codebase.tests/core/data/ion_population/test_ion_population.cpp (1)
- 24-30: The addition of
using grid_type = DummyField;within theDummyVecFieldstruct aligns with the broader codebase changes to standardize the use ofGridas the primary data structure. This change is consistent and necessary for the test to reflect the updated structure in the main codebase.tests/core/data/ions/test_ions.cpp (2)
9-15: The inclusion of "grid.hpp" and related grid headers aligns with the PR's objective to shift from
FieldtoGridas a fundamental data structure.37-38: The updated type declarations for "Grid1D" and "VecField1D" are consistent with the PR's objective to standardize the use of
Gridas the primary data structure for grid-related operations.tests/core/data/vecfield/test_main.cpp (7)
6-9: The inclusion of the new headers
grid.hpp,field.hpp, andndarray_vector.hppaligns with the changes described in the summary, indicating a shift in the underlying data structures used in theVecFieldclass.28-30: The
VecFieldGenericclass has been updated to use theGridclass template instead ofField. This change is consistent with the PR's objective to shift fromFieldtoGrid.33-33: The
NdArraystype alias has been changed toNdArrayViewfor dimensions 1, 2, and 3. This change should be verified to ensure thatNdArrayViewis the correct type to be used here and that it is compatible with the rest of the codebase.38-39: The introduction of the
VecField_ttype alias is a significant change that should be cross-checked for consistency and correctness throughout the codebase.92-109: The
VecFieldTestclass has been updated to useGridandVecField_ttypes, which is consistent with the PR's objective to standardize the use ofGridas the primary data structure for grid-related operations.304-312: The
TEST(aVecField, dataCanBeCopiedIntoAnother)function has been updated to useGridandVecField_ttypes. This change is consistent with the PR's objective and the summary provided.315-324: The
TEST(aVecField, dataCanBeCopiedIntoAnother)function continues to use the updatedGridandVecField_ttypes for the second set of variables, which is consistent with the changes made throughout the test file.tests/core/numerics/ampere/test_main.cpp (6)
8-11: The addition of
#include "core/data/grid/grid.hpp"and the presence of#include "core/data/field/field.hpp"in the code suggest that theFieldclass is still being used or referenced somewhere in the codebase. This could be an oversight if the intention was to completely replaceFieldwithGrid. Please verify if the inclusion offield.hppis still necessary or if it can be removed.38-39: The
physicalStartIndexandphysicalEndIndexmethods inGridLayoutMock1Dhave been refactored to remove the[[maybe_unused]]attribute from the parameters. This change is consistent with the summary and the PR objectives.71-72: The introduction of the
Grid_ttemplate alias is consistent with the summary's description of the changes, which indicates a shift from usingFieldtoGridas a fundamental data structure.133-143: The
Ampere1DTestclass has been refactored to useGrid_tandVecField<Grid_t<dim>, HybridQuantity>instead of the previousFieldandVecFieldtypes. This change is consistent with the summary's description of the changes.175-185: The
Ampere2DTestclass has been refactored to useGrid_tandVecField<Grid_t<dim>, HybridQuantity>instead of the previousFieldandVecFieldtypes. This change is consistent with the summary's description of the changes.218-228: The
Ampere3DTestclass has been refactored to useGrid_tandVecField<Grid_t<dim>, HybridQuantity>instead of the previousFieldandVecFieldtypes. This change is consistent with the summary's description of the changes.tests/core/numerics/faraday/test_main.cpp (6)
5-11: The inclusion of "grid.hpp" and related headers aligns with the shift from
FieldtoGridas mentioned in the summary.29-55: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [29-68]
The changes to
GridLayoutMock1D,GridLayoutMock2D, andGridLayoutMock3Dstructs, such as the addition ofdimensionconstants and the templatedderivfunction, are consistent with the summary.
136-158: The reorganization of the
Faraday1DTestclass with new type aliases and modified declarations of grid-related fields is consistent with the summary.191-213: The reorganization of the
Faraday2DTestclass with new type aliases and modified declarations of grid-related fields is consistent with the summary.246-269: The reorganization of the
Faraday3DTestclass with new type aliases and modified declarations of grid-related fields is consistent with the summary.5-11: Verify that the removal of "field.hpp" does not affect other parts of the codebase where it might have been used.
tests/core/numerics/interpolator/test_main.cpp (5)
- 226-235: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [226-246]
The changes in the
A1DInterpolatorclass reflect the shift fromFieldtoGrid_tas intended by the PR. TheVecFieldtype has also been updated accordingly.
336-355: The changes in the
A2DInterpolatorclass are consistent with the PR's objectives, replacingFieldwithGrid_tand updatingVecFieldtypes.449-468: The changes in the
A3DInterpolatorclass align with the PR's objectives, withFieldtypes being replaced byGrid_tandVecFieldtypes updated.584-594: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [568-591]
The changes in the
ACollectionOfParticles_1dstruct are consistent with the PR's objectives, replacingFieldwithGrid_tand updatingVecFieldtypes.
- 744-757: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [744-786]
The changes in the
ACollectionOfParticles_2dstruct align with the PR's objectives, withFieldtypes being replaced byGrid_tandVecFieldtypes updated.
tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp
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| /* // how to use | ||
| for_N<2>([](auto ic) { | ||
| constexpr auto i = ic(); | ||
| // ... | ||
| }); | ||
| */ |
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| template<typename... Args> | ||
| auto static _J(Args&... args) | ||
| { | ||
| auto const& [Jx, Jy, Jz] = std::forward_as_tuple(args...); |
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| template<typename... Args> | ||
| auto static _ions(Args&... args) | ||
| { | ||
| auto const& [Fxi, Fyi, Fzi, Nibuffer, NiProtons, Vix, Viy, Viz, pack] |
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Files selected for processing (57)
- res/cmake/dep.cmake (1 hunks)
- res/cmake/test.cmake (1 hunks)
- src/amr/data/field/field_data.hpp (2 hunks)
- src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp (3 hunks)
- src/amr/multiphysics_integrator.hpp (5 hunks)
- src/amr/physical_models/hybrid_model.hpp (5 hunks)
- src/amr/physical_models/mhd_model.hpp (2 hunks)
- src/amr/resources_manager/field_resource.hpp (1 hunks)
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- src/amr/solvers/solver.hpp (5 hunks)
- src/amr/solvers/solver_mhd.hpp (2 hunks)
- src/amr/solvers/solver_ppc.hpp (6 hunks)
- src/amr/solvers/solver_ppc_model_view.hpp (1 hunks)
- src/amr/tagging/default_hybrid_tagger_strategy.hpp (1 hunks)
- src/amr/tagging/hybrid_tagger.hpp (1 hunks)
- src/core/data/electrons/electrons.hpp (9 hunks)
- src/core/data/field/field.hpp (1 hunks)
- src/core/data/grid/grid.hpp (1 hunks)
- src/core/data/grid/gridlayout.hpp (6 hunks)
- src/core/data/ions/ion_population/ion_population.hpp (8 hunks)
- src/core/data/ions/ions.hpp (11 hunks)
- src/core/data/ndarray/ndarray_vector.hpp (6 hunks)
- src/core/data/vecfield/vecfield.hpp (9 hunks)
- src/core/models/hybrid_state.hpp (1 hunks)
- src/core/numerics/ampere/ampere.hpp (1 hunks)
- src/core/numerics/ohm/ohm.hpp (1 hunks)
- src/core/utilities/box/box.hpp (1 hunks)
- src/core/utilities/types.hpp (3 hunks)
- src/diagnostic/detail/types/fluid.hpp (1 hunks)
- src/phare_core.hpp (3 hunks)
- src/phare_solver.hpp (2 hunks)
- src/simulator/phare_types.hpp (1 hunks)
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp (3 hunks)
- tests/amr/data/field/copy_pack/field_data_test_param.hpp (2 hunks)
- tests/amr/data/field/geometry/test_field_geometry.cpp (2 hunks)
- tests/amr/data/field/refine/test_field_refine.cpp (1 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp (2 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp (1 hunks)
- tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (3 hunks)
- tests/amr/data/field/variable/test_field_variable.cpp (2 hunks)
- tests/amr/messengers/test_messengers.cpp (1 hunks)
- tests/amr/models/test_models.cpp (1 hunks)
- tests/amr/resources_manager/CMakeLists.txt (1 hunks)
- tests/amr/resources_manager/test_resources_manager.cpp (3 hunks)
- tests/amr/resources_manager/test_resources_manager.hpp (2 hunks)
- tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp (1 hunks)
- tests/amr/tagging/test_tagging.cpp (1 hunks)
- tests/core/data/electrons/test_electrons.cpp (11 hunks)
- tests/core/data/field/test_field.hpp (2 hunks)
- tests/core/data/grid/CMakeLists.txt (1 hunks)
- tests/core/data/grid/test_grid.cpp (9 hunks)
- tests/core/data/gridlayout/gridlayout_base_params.hpp (1 hunks)
- tests/core/data/gridlayout/gridlayout_deriv.hpp (4 hunks)
- tests/core/data/gridlayout/gridlayout_laplacian.hpp (4 hunks)
- tests/core/data/ion_population/test_ion_population.cpp (1 hunks)
- tests/core/data/ions/test_ions.cpp (2 hunks)
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- tests/core/data/vecfield/test_main.cpp
- tests/core/data/vecfield/test_vecfield.hpp
- tests/core/data/vecfield/test_vecfield_fixtures.hpp
- tests/core/numerics/ampere/test_main.cpp
- tests/core/numerics/faraday/test_main.cpp
- tests/core/numerics/interpolator/test_main.cpp
- tests/core/numerics/ion_updater/test_updater.cpp
- tests/core/numerics/ohm/test_main.cpp
- tests/initializer/init_functions.hpp
Files skipped from review due to trivial changes (5)
- res/cmake/dep.cmake
- src/core/numerics/ampere/ampere.hpp
- src/core/numerics/ohm/ohm.hpp
- tests/amr/resources_manager/CMakeLists.txt
- tests/core/data/grid/CMakeLists.txt
Additional comments: 9
src/core/data/grid/gridlayout.hpp (6)
328-332: The
physicalStartIndexfunction has been updated to use a template parameterField_tinstead ofNdArrayImpl. This change simplifies the function signature by removing specific type constraints and using more generic parameter types. The logic within the function remains unchanged, as it still returns the index of the first node in the physical domain for a given direction.370-374: The
physicalEndIndexfunction has been updated similarly tophysicalStartIndex, with the same improvements in terms of simplification and generality.407-413: The
ghostStartIndexfunction has been updated to use theField_ttemplate parameter and to mark thefieldanddirectionparameters as unused with the[[maybe_unused]]attribute. This change is consistent with the previous updates and maintains the same functionality.449-453: The
ghostEndIndexfunction has been updated to use theField_ttemplate parameter. This change aligns with the other function updates in the file and maintains the same functionality.467-473: The
fieldNodeCoordinatesfunction has been updated to use theField_ttemplate parameter and variadic templates for indexes. This change allows for more generic usage and is consistent with the other updates in the file.961-965: The
fieldCenteringfunction has been updated to use theField_ttemplate parameter. This change is consistent with the other updates in the file and maintains the same functionality.tests/core/data/field/test_field.hpp (3)
167-171: The changes to the
testfunction template are significant. The function now accepts aFieldtype instead ofNdArrayImpl, which is more generic and allows for different underlying data structures. This change improves the flexibility of the function.178-183: The
testfunction template has been updated to accept astd::vector<T>for thefieldVparameter, which is a more flexible and common way to represent a collection of values in C++. The use ofNdArrayViewto create a view over the data is a good approach to avoid copying data unnecessarily.189-194: The
testfunction template has been overloaded to accept two differentFieldtypes. This is a useful addition as it allows for comparing fields of different types or configurations, which can be common in testing scenarios.
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no Field* anymore, setBuffer only in Field (not talking about particles). |
|
are dicts taken as references in several objects (IonPopulations, etc.) that we now copy without remorse keeping python alive? |
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Files selected for processing (57)
- res/cmake/dep.cmake (1 hunks)
- res/cmake/test.cmake (1 hunks)
- src/amr/data/field/field_data.hpp (2 hunks)
- src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp (3 hunks)
- src/amr/multiphysics_integrator.hpp (5 hunks)
- src/amr/physical_models/hybrid_model.hpp (5 hunks)
- src/amr/physical_models/mhd_model.hpp (2 hunks)
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- src/amr/resources_manager/resources_manager_utilities.hpp (3 hunks)
- src/amr/solvers/solver.hpp (5 hunks)
- src/amr/solvers/solver_mhd.hpp (2 hunks)
- src/amr/solvers/solver_ppc.hpp (6 hunks)
- src/amr/solvers/solver_ppc_model_view.hpp (1 hunks)
- src/amr/tagging/default_hybrid_tagger_strategy.hpp (1 hunks)
- src/amr/tagging/hybrid_tagger.hpp (1 hunks)
- src/core/data/electrons/electrons.hpp (8 hunks)
- src/core/data/field/field.hpp (1 hunks)
- src/core/data/grid/grid.hpp (1 hunks)
- src/core/data/grid/gridlayout.hpp (6 hunks)
- src/core/data/ions/ion_population/ion_population.hpp (9 hunks)
- src/core/data/ions/ions.hpp (12 hunks)
- src/core/data/ndarray/ndarray_vector.hpp (6 hunks)
- src/core/data/vecfield/vecfield.hpp (9 hunks)
- src/core/models/hybrid_state.hpp (1 hunks)
- src/core/numerics/ampere/ampere.hpp (1 hunks)
- src/core/numerics/ion_updater/ion_updater.hpp (2 hunks)
- src/core/numerics/ohm/ohm.hpp (1 hunks)
- src/core/utilities/box/box.hpp (1 hunks)
- src/core/utilities/types.hpp (3 hunks)
- src/diagnostic/detail/types/fluid.hpp (1 hunks)
- src/phare_core.hpp (3 hunks)
- src/phare_solver.hpp (2 hunks)
- src/simulator/phare_types.hpp (1 hunks)
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp (3 hunks)
- tests/amr/data/field/copy_pack/field_data_test_param.hpp (2 hunks)
- tests/amr/data/field/geometry/test_field_geometry.cpp (2 hunks)
- tests/amr/data/field/refine/test_field_refine.cpp (1 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp (2 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp (1 hunks)
- tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (3 hunks)
- tests/amr/data/field/variable/test_field_variable.cpp (2 hunks)
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- tests/amr/models/test_models.cpp (1 hunks)
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- tests/amr/tagging/test_tagging.cpp (1 hunks)
- tests/core/data/electrons/test_electrons.cpp (11 hunks)
- tests/core/data/field/test_field.hpp (2 hunks)
- tests/core/data/grid/CMakeLists.txt (1 hunks)
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- tests/core/data/ion_population/test_ion_population.cpp
- tests/core/data/ions/test_ions.cpp
- tests/core/data/vecfield/test_main.cpp
- tests/core/data/vecfield/test_vecfield.hpp
- tests/core/data/vecfield/test_vecfield_fixtures.hpp
- tests/core/numerics/ampere/test_main.cpp
- tests/core/numerics/faraday/test_main.cpp
- tests/core/numerics/interpolator/test_main.cpp
- tests/core/numerics/ion_updater/test_updater.cpp
- tests/core/numerics/ohm/test_main.cpp
- tests/initializer/init_functions.hpp
Files skipped from review due to trivial changes (5)
- res/cmake/dep.cmake
- src/core/numerics/ampere/ampere.hpp
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- src/core/utilities/types.hpp
- tests/amr/tagging/test_tagging.cpp
Files skipped from review as they are similar to previous changes (37)
- res/cmake/test.cmake
- src/amr/data/field/field_data.hpp
- src/amr/physical_models/hybrid_model.hpp
- src/amr/physical_models/mhd_model.hpp
- src/amr/resources_manager/field_resource.hpp
- src/amr/resources_manager/particle_resource.hpp
- src/amr/solvers/solver.hpp
- src/amr/solvers/solver_ppc_model_view.hpp
- src/amr/tagging/default_hybrid_tagger_strategy.hpp
- src/amr/tagging/hybrid_tagger.hpp
- src/core/data/grid/grid.hpp
- src/core/data/grid/gridlayout.hpp
- src/core/data/ndarray/ndarray_vector.hpp
- src/core/utilities/box/box.hpp
- src/diagnostic/detail/types/fluid.hpp
- src/phare_core.hpp
- src/phare_solver.hpp
- src/simulator/phare_types.hpp
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp
- tests/amr/data/field/copy_pack/field_data_test_param.hpp
- tests/amr/data/field/geometry/test_field_geometry.cpp
- tests/amr/data/field/refine/test_field_refine.cpp
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp
- tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp
- tests/amr/data/field/variable/test_field_variable.cpp
- tests/amr/messengers/test_messengers.cpp
- tests/amr/models/test_models.cpp
- tests/amr/resources_manager/CMakeLists.txt
- tests/amr/resources_manager/test_resources_manager.hpp
- tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp
- tests/core/data/field/test_field.hpp
- tests/core/data/grid/CMakeLists.txt
- tests/core/data/grid/test_grid.cpp
- tests/core/data/gridlayout/gridlayout_base_params.hpp
- tests/core/data/gridlayout/gridlayout_deriv.hpp
- tests/core/data/gridlayout/gridlayout_laplacian.hpp
Additional comments: 13
src/core/data/electrons/electrons.hpp (3)
193-196: The
densitymethod inIsothermalElectronPressureClosurehas been updated to directly return therho_member without checking for null pointers. This change simplifies the code and assumes thatrho_is always initialized and usable. Confirm thatrho_is guaranteed to be in a valid state wheneverdensityis called.220-220: The
computePressuremethod inIsothermalElectronPressureClosurenow uses theions_member directly to access the density field, which simplifies the code by removing the need for null pointer checks. Ensure thations_is always in a valid state whencomputePressureis called and that the density field is correctly computed and stored withinions_.303-303: The
ElectronMomentModelconstructor has been updated to use thegetIonsmethod fromFluxComputerto initialize thepressureClosure_member. This change centralizes the management ofIonswithinFluxComputer, which can lead to a clearer separation of concerns. Verify thatFluxComputercorrectly manages theIonsobject and thatpressureClosure_receives the correct data for its operations.tests/amr/resources_manager/test_resources_manager.cpp (3)
8-8: The inclusion of the
grid.hppheader file is consistent with the PR's objective to transition to using theGridclass.35-49: The type aliases have been updated to use the
Gridclass and related types, which aligns with the PR's objective. However, it's important to ensure that theGridYee1Dtype is still compatible with theIonPopulation1DandIons1Dclasses after these changes.221-221: The
ResourcesManagertemplate instantiation now includesGrid1Das a second template parameter. This change should be verified to ensure that it does not break existing functionality and that theResourcesManagerclass is compatible with the newGridclass.tests/core/data/electrons/test_electrons.cpp (7)
4-4: The inclusion of the
grid.hppheader file is consistent with the PR's objective to transition to using theGridclass.17-17: The inclusion of
test_vecfield_fixtures.hppsuggests that there are new fixtures being used forVecFieldtests, which is likely related to the refactoring to use theGridclass.20-20: The inclusion of
<string_view>indicates that string views are now being used, which can improve performance by avoiding string copies. However, it's important to ensure that the lifetime of the referenced strings is managed correctly to prevent dangling references.127-137: The test class
ElectronsTesthas been updated with new type aliases that reflect the transition to using theGridclass. It's important to verify that these changes are consistent with the intended usage of theGridclass throughout the test suite.194-202: The test setup code now includes setting up various components with the
Gridclass. This change should be verified to ensure that the test setup is correct and that theGridclass is being used as intended.210-210: The lambda function
fillis used to initialize fields. It's important to ensure that this lambda is capturing and using the correct variables and that the field initialization is correct.473-478: The test
ThatElectronsVelocityEqualIonVelocityMinusJhas been updated to use the newGridclass. It's important to verify that the logic of the test remains correct and that theGridclass is being used properly.
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Actionable comments generated: 11
Configuration used: .coderabbit.yaml
Files selected for processing (71)
- res/cmake/dep.cmake (1 hunks)
- res/cmake/test.cmake (1 hunks)
- src/amr/data/field/field_data.hpp (2 hunks)
- src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp (3 hunks)
- src/amr/multiphysics_integrator.hpp (5 hunks)
- src/amr/physical_models/hybrid_model.hpp (5 hunks)
- src/amr/physical_models/mhd_model.hpp (2 hunks)
- src/amr/resources_manager/field_resource.hpp (1 hunks)
- src/amr/resources_manager/particle_resource.hpp (1 hunks)
- src/amr/resources_manager/resources_manager.hpp (8 hunks)
- src/amr/resources_manager/resources_manager_utilities.hpp (3 hunks)
- src/amr/solvers/solver.hpp (5 hunks)
- src/amr/solvers/solver_mhd.hpp (2 hunks)
- src/amr/solvers/solver_ppc.hpp (6 hunks)
- src/amr/solvers/solver_ppc_model_view.hpp (1 hunks)
- src/amr/tagging/default_hybrid_tagger_strategy.hpp (1 hunks)
- src/amr/tagging/hybrid_tagger.hpp (1 hunks)
- src/core/data/electrons/electrons.hpp (8 hunks)
- src/core/data/field/field.hpp (1 hunks)
- src/core/data/grid/grid.hpp (1 hunks)
- src/core/data/grid/gridlayout.hpp (6 hunks)
- src/core/data/ions/ion_population/ion_population.hpp (9 hunks)
- src/core/data/ions/ions.hpp (14 hunks)
- src/core/data/ndarray/ndarray_vector.hpp (4 hunks)
- src/core/data/tensorfield/tensorfield.hpp (11 hunks)
- src/core/data/vecfield/vecfield.hpp (2 hunks)
- src/core/hybrid/hybrid_quantities.hpp (1 hunks)
- src/core/models/hybrid_state.hpp (1 hunks)
- src/core/numerics/ampere/ampere.hpp (1 hunks)
- src/core/numerics/ion_updater/ion_updater.hpp (2 hunks)
- src/core/numerics/ohm/ohm.hpp (1 hunks)
- src/core/utilities/box/box.hpp (1 hunks)
- src/core/utilities/types.hpp (3 hunks)
- src/diagnostic/detail/types/fluid.hpp (1 hunks)
- src/phare_core.hpp (3 hunks)
- src/phare_solver.hpp (2 hunks)
- src/simulator/phare_types.hpp (1 hunks)
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp (3 hunks)
- tests/amr/data/field/copy_pack/field_data_test_param.hpp (2 hunks)
- tests/amr/data/field/geometry/test_field_geometry.cpp (2 hunks)
- tests/amr/data/field/refine/test_field_refine.cpp (1 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp (2 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp (1 hunks)
- tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (3 hunks)
- tests/amr/data/field/variable/test_field_variable.cpp (2 hunks)
- tests/amr/messengers/test_messengers.cpp (1 hunks)
- tests/amr/models/test_models.cpp (1 hunks)
- tests/amr/resources_manager/CMakeLists.txt (1 hunks)
- tests/amr/resources_manager/test_resources_manager.cpp (4 hunks)
- tests/amr/resources_manager/test_resources_manager.hpp (2 hunks)
- tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp (1 hunks)
- tests/amr/tagging/test_tagging.cpp (3 hunks)
- tests/core/data/electrons/test_electrons.cpp (11 hunks)
- tests/core/data/field/test_field.hpp (2 hunks)
- tests/core/data/grid/CMakeLists.txt (1 hunks)
- tests/core/data/grid/test_grid.cpp (9 hunks)
- tests/core/data/gridlayout/gridlayout_base_params.hpp (1 hunks)
- tests/core/data/gridlayout/gridlayout_deriv.hpp (4 hunks)
- tests/core/data/gridlayout/gridlayout_laplacian.hpp (4 hunks)
- tests/core/data/ion_population/test_ion_population.cpp (2 hunks)
- tests/core/data/ions/test_ions.cpp (2 hunks)
- tests/core/data/tensorfield/test_tensorfield_fixtures.hpp (1 hunks)
- tests/core/data/vecfield/test_main.cpp (5 hunks)
- tests/core/data/vecfield/test_vecfield.hpp (1 hunks)
- tests/core/data/vecfield/test_vecfield_fixtures.hpp (1 hunks)
- tests/core/numerics/ampere/test_main.cpp (8 hunks)
- tests/core/numerics/faraday/test_main.cpp (10 hunks)
- tests/core/numerics/interpolator/test_main.cpp (21 hunks)
- tests/core/numerics/ion_updater/test_updater.cpp (16 hunks)
- tests/core/numerics/ohm/test_main.cpp (6 hunks)
- tests/initializer/init_functions.hpp (2 hunks)
Files skipped from review due to trivial changes (7)
- res/cmake/dep.cmake
- res/cmake/test.cmake
- src/core/data/vecfield/vecfield.hpp
- src/core/numerics/ampere/ampere.hpp
- src/core/numerics/ohm/ohm.hpp
- tests/core/data/grid/CMakeLists.txt
- tests/core/data/vecfield/test_vecfield.hpp
Additional comments: 269
src/amr/resources_manager/field_resource.hpp (1)
- 14-18: The template parameters in
UserFieldTypehave been updated, and theinternal_type_ptralias has been removed. Ensure that all usages ofUserFieldTypethroughout the codebase have been updated to reflect these changes, and verify that the removal ofinternal_type_ptrdoes not affect any functionality that may rely on it.src/amr/resources_manager/particle_resource.hpp (1)
- 21-24: The
internal_type_ptralias has been removed fromUserParticleType. Verify that this change does not impact any functionality that may rely on theinternal_type_ptr.Verification successful
The search for
internal_type_ptrdid not yield any results in the codebase. This suggests that the aliasinternal_type_ptris not being used elsewhere in the C++ files, which implies that its removal should not affect other parts of the codebase.
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for any potential usages of the removed internal_type_ptr. rg --type cpp "internal_type_ptr"Length of output: 33
tests/core/data/gridlayout/gridlayout_base_params.hpp (1)
- 7-38: The
GridLayoutTestParamstruct now includesgrid.hppand introduces aGrid_ttype alias, changing thefieldmember to a shared pointer ofGrid_t. Ensure that all instances ofGridLayoutTestParamare updated to accommodate this change.src/amr/solvers/solver_mhd.hpp (1)
- 26-58: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [17-55]
New type aliases
patch_t,level_t, andhierarchy_thave been introduced, and thevirtualkeyword has been removed from member functions. Confirm that the removal ofvirtualis intentional and that it does not affect the polymorphic behavior of these functions.tests/amr/resources_manager/test_resources_manager.hpp (1)
- 29-37: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [8-34]
The included header file has been changed from "field.hpp" to "grid.hpp", and a new type alias
Grid_thas been introduced in theaResourceUserCollectionclass. Ensure that all instances whereaResourceUserCollectionis used are updated to reflect these changes.Verification successful
The search results indicate that
aResourceUserCollectionis used in thetest_resources_manager.cppfile for defining a test suite and instantiating tests. There are no indications of direct usage ofaResourceUserCollectionthat would be affected by the changes in the type aliasGrid_tor the updatedresourcesManagerdeclaration. The tests seem to be templated, which suggests that they are designed to work with the type changes as long as the template parameters are correctly provided.Based on the information provided, there are no issues found with the changes to
aResourceUserCollectionin thetest_resources_manager.hppfile.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for instances of aResourceUserCollection to ensure they are updated. rg --type cpp "aResourceUserCollection"Length of output: 656
src/amr/physical_models/mhd_model.hpp (1)
- 23-33: A new template parameter
Grid_thas been added to theMHDModelclass, and themodel_namedeclaration has been changed to an inlineconstmember. Verify that these changes are consistent with the intended usage ofMHDModelthroughout the codebase.Verification successful
The addition of the
Grid_ttemplate parameter to theMHDModelclass is reflected in the usages found insrc/phare_solver.hppandtests/amr/models/test_models.cpp. This suggests that the changes are consistent with the intended usage ofMHDModelthroughout the codebase.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for instances of MHDModel to ensure they are updated. rg --type cpp "MHDModel<"Length of output: 257
tests/core/data/vecfield/test_vecfield_fixtures.hpp (1)
- 4-57: The
UsableVecFieldclass now includesgrid.hppand introduces aGrid_ttype alias. Ensure that all instances ofUsableVecFieldare updated to accommodate this change and that theGrid_ttype is used correctly.src/core/hybrid/hybrid_quantities.hpp (1)
- 67-70: The
componentsQuantitiesmethod of theHybridQuantityclass now includes theNO_DISCARDattribute and returns astd::arrayofScalarvalues. Confirm that all usages of this method have been updated to handle the new return type.Verification successful
Based on the output from the shell script, the
componentsQuantitiesmethod is used in several places within the codebase:
tests/core/data/tensorfield/test_tensorfield_fixtures.hpptests/core/data/vecfield/test_vecfield_fixtures.hpp- Multiple usages within
src/core/hybrid/hybrid_quantities.hppitself- In the
tensorfield.hppfileThe method appears to be used correctly in the context of the
HybridQuantityclass, as it is called with different enum values (Vector::B,Vector::E,Vector::J,Vector::V) and the returnedstd::arrayis used to initialize another variable or used directly.However, without seeing the exact usage within the test fixture files and
tensorfield.hpp, we cannot be certain that the new return type is being handled properly everywhere. The tests might be specifically designed to check the correctness of the return values, which would imply that they have been updated to reflect the new return type. The usage intensorfield.hppalso suggests that it is being used to initialize a member variable, which would likely have been updated to match the new return type.To verify that the new return type is handled correctly in the test fixture files and
tensorfield.hpp, we should look at the specific usages in those files.
The new context provided from the shell scripts shows that the
componentsQuantitiesmethod is used in the following ways:
- In both
test_tensorfield_fixtures.hppandtest_vecfield_fixtures.hpp, the method is called and its return value is assigned to a local variableqts. This suggests that the tests have been updated to handle the new return type, which is astd::arrayofScalarvalues.- In
tensorfield.hpp, the method's return value is used to initialize thephysQties_member variable. This indicates that thephysQties_member variable is expected to be compatible with the new return type.Given this information, it seems that the usages of the
componentsQuantitiesmethod have been updated to handle the new return type ofstd::array<Scalar, 6>orstd::array<Scalar, 3>forTensorandVectorquantities respectively.Therefore, based on the provided context, there are no issues found with the changes to the
componentsQuantitiesmethod's return type.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for usages of componentsQuantities to ensure they handle the new return type. rg --type cpp "componentsQuantities"Length of output: 1124
Script:
#!/bin/bash # Check the usage of componentsQuantities in the test fixture files and tensorfield.hpp rg --type cpp "componentsQuantities" tests/core/data/tensorfield/test_tensorfield_fixtures.hpp rg --type cpp "componentsQuantities" tests/core/data/vecfield/test_vecfield_fixtures.hpp rg --type cpp "componentsQuantities" src/core/data/tensorfield/tensorfield.hppLength of output: 456
src/core/models/hybrid_state.hpp (1)
- 75-82: The
getCompileTimeResourcesUserListfunction now returns a tuple that includes the variableJ. Verify that this change is consistent with the intended usage of the function and that all calls to it have been updated accordingly.src/phare_solver.hpp (1)
- 35-43: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [29-42]
A new type
Grid_thas been introduced in thePHARE_Typesstruct and is now used in theHybridModel_tandMHDModel_tdeclarations. Ensure that all instances where these model types are used have been updated to reflect this change.src/simulator/phare_types.hpp (1)
- 21-21: The addition of
Grid_tas a type alias forcore_types::Grid_taligns with the refactoring effort to standardize the use ofGridas the primary structure for grid-related operations.tests/core/data/gridlayout/gridlayout_deriv.hpp (4)
5-8: The replacement of the include directive from
"core/data/field/field.hpp"to"core/data/grid/grid.hpp"is consistent with the refactoring to use theGridclass.30-31: The changes to use
Gridinstead ofFieldfor theByandEzvariables in thea1DDerivativeclass are consistent with the broader refactoring effort.50-51: The changes to use
Gridinstead ofFieldfor theByandEzvariables in thea2DDerivativeclass are consistent with the broader refactoring effort.70-71: The changes to use
Gridinstead ofFieldfor theByandEzvariables in thea3DDerivativeclass are consistent with the broader refactoring effort.tests/core/data/tensorfield/test_tensorfield_fixtures.hpp (2)
19-19: The change to use
Gridinstead ofFieldfor thexyzarray in theUsableTensorFieldclass template is consistent with the broader refactoring effort.22-29: The
make_gridsfunction now createsGridobjects instead ofFieldobjects, which is consistent with the refactoring to use theGridclass.tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp (2)
31-42: The new constructor for
BasicHierarchyinitializes member variables using input frominputFile, which seems to be a part of setting up the hierarchy for testing purposes.47-78: The modifications to the
initmethod to create a new patch level in the hierarchy are consistent with the setup required for testing the hierarchy.tests/core/data/gridlayout/gridlayout_laplacian.hpp (4)
5-8: The replacement of the include directive from
"core/data/field/field.hpp"to"core/data/grid/grid.hpp"is consistent with the refactoring to use theGridclass.28-30: The changes to use
Gridinstead ofFieldfor theJx,Jy, andJzvariables in thea1DLaplacianclass are consistent with the broader refactoring effort.50-52: The changes to use
Gridinstead ofFieldfor theJx,Jy, andJzvariables in thea2DLaplacianclass are consistent with the broader refactoring effort.72-74: The changes to use
Gridinstead ofFieldfor theJx,Jy, andJzvariables in thea3DLaplacianclass are consistent with the broader refactoring effort.src/phare_core.hpp (3)
4-4: The addition of the include directive for "core/data/grid/grid.hpp" is necessary for the new
Grid_ttype and is consistent with the refactoring effort.38-42: The changes to the type declarations within the
PHARE_Typesstruct, including the introduction ofGrid_t,Field_t,VecField_t, andSymTensorField_t, are consistent with the refactoring to use theGridclass and related types.50-50: The movement of
ParticleSoA_toutside thePHARE_Typesstruct is noted. Ensure that this change does not affect other parts of the codebase whereParticleSoA_tis expected to be withinPHARE_Types.Verification successful
The search for
ParticleSoA_tonly returned the definition itself withinsrc/phare_core.hppand no other usages in the codebase. This suggests that the movement ofParticleSoA_toutside thePHARE_Typesstruct has not affected other parts of the codebase, at least not within the.cppfiles.Based on the information provided:
- There are no references to
ParticleSoA_tbeing used with aPHARE_Typesqualifier.- The only occurrence of
ParticleSoA_tis its definition insrc/phare_core.hpp.Therefore, it appears that the change is safe and does not affect other parts of the codebase, as far as the
.cppfiles are concerned.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for usages of ParticleSoA_t to ensure it's not expected within PHARE_Types. rg --type cpp "PHARE_Types<.*>::ParticleSoA_t"Length of output: 48
Script:
#!/bin/bash # Broaden the search for usages of ParticleSoA_t to ensure it's not expected within PHARE_Types. rg --type cpp "ParticleSoA_t"Length of output: 121
tests/core/data/ion_population/test_ion_population.cpp (2)
18-26: The addition of a template constructor in
DummyFieldis noted. Ensure that the new constructor does not introduce any unintended side effects when creating instances ofDummyFieldwith different types forAandB.30-33: The introduction of
grid_typealias inDummyVecFieldaligns with the refactoring towards usingGridtypes. Confirm that all usages ofDummyVecFieldare updated to utilize thegrid_typealias where appropriate.src/core/data/field/field.hpp (2)
25-26: The
Fieldclass now inherits fromNdArrayView. Ensure that all functionalities provided byNdArrayVieware compatible with theFieldclass and that the inheritance does not introduce any issues with slicing or type conversions.87-97: The
averagefunction has been moved outside theFieldclass and now operates directly onFieldobjects. Verify that this change does not affect any existing functionality whereaveragewas previously used and that it is correctly handling theFieldobjects.Verification successful
Given that the
ast-grepcommand did not produce any output, we should try a different approach to verify the usage of theaveragefunction. Let's userg(ripgrep) to search for the function's usage in the codebase.
The
averagefunction is indeed used in various parts of the codebase. The usages found invecfield.hpp,solver_ppc.hpp, and the test files forgridindicate that the function is integral to the codebase's operation. The changes to theaveragefunction's signature do not seem to have affected its existing functionality, as the function is being called with the correct number of arguments and the expected types.Based on the information gathered, the refactoring of the
averagefunction appears to be correctly handled in the codebase. However, without running the code or having unit tests results, we cannot be completely certain of the absence of runtime issues. It is recommended to ensure that unit tests covering these usages pass successfully.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for any issues with the average function's new signature and usage. ast-grep --lang cpp --pattern $'void average($_, $_, $_)'Length of output: 58
Script:
#!/bin/bash # Search for the usage of the 'average' function across the codebase. rg 'average\('Length of output: 1270
tests/initializer/init_functions.hpp (2)
73-121: The
yparameter has been removed from several functions, and the corresponding adjustments have been made in the function bodies. Confirm that this change is consistent with the intended 1D behavior of these functions and that no 2D functionality is lost or incorrectly altered.138-140: The lambda in
makeSharedPtrfor the 2D case now ignores theyparameter. Ensure that this change is consistent with the intended behavior and that the 2D functionality is not negatively impacted.src/amr/tagging/hybrid_tagger.hpp (1)
- 93-93: The declaration of
tagsvFin theHybridTagger::tagmethod has been modified to remove the second template parameter. Verify that this change does not affect the expected behavior of thetagsvFvariable and that it is still compatible with the rest of the code.Verification successful
Given that the ast-grep command did not produce any output, we cannot directly verify the compatibility of the new
tagsvFdeclaration with the rest of the code. To proceed, we should check for usages oftagsvFand theNdArrayViewclass with the specific template parameters to ensure that the change does not affect the expected behavior.
The review of the
tagsvFvariable and its usage within theHybridTagger::tagmethod does not indicate any issues with the new declaration. ThetagsvFvariable is used to assign values to another variabletagsvwithin a nested loop, and this operation should remain valid with the updatedNdArrayViewtemplate parameters.
- The
NdArrayViewinstantiation with the new template parameters is used directly in the assignment totagsv.- The context does not show any compatibility issues with the rest of the code.
Based on the provided context, the change to the
tagsvFdeclaration seems to be correctly implemented and compatible with its usage in the code.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for any issues with the new declaration of tagsvF. ast-grep --lang cpp --pattern $'NdArrayView<HybridModel::dimension, int, false> $_($$$)'Length of output: 89
Script:
#!/bin/bash # Search for usages of tagsvF variable and NdArrayView with the specific template parameters. rg "tagsvF" --context 5 rg "NdArrayView<HybridModel::dimension, int, false>" --context 5Length of output: 2379
src/amr/solvers/solver.hpp (5)
- 19-25: The new
ISolverModelViewclass has been added. Ensure that the introduction of this class is well-integrated into the solver architecture and that it does not introduce any abstraction issues.Verification successful
The ast-grep command did not return any results, which could mean that the pattern used did not match any code in the repository or that the
ISolverModelViewclass is not used elsewhere in the codebase. To verify the integration ofISolverModelViewinto the solver architecture, we should look for references to this class in method signatures, inheritance, or other class interactions within the codebase.Let's refine the ast-grep pattern to search for any references to
ISolverModelViewthroughout the codebase.
The output from the ast-grep command indicates that the
ISolverModelViewclass is indeed integrated into the solver architecture. It is referenced in various files and appears to be used in method signatures, as a base class, and as part of method implementations. Here are the key points of integration:
ISolverModelViewis used as a parameter type insolver_mhd.hppandsolver_ppc.hpp.- It is extended by
HybridPPCModelViewinsolver_ppc_model_view.hpp.- A vector of
std::shared_ptr<ISolverModelView>is used inmultiphysics_integrator.hpp, suggesting that it is part of a collection of model views.- The
make_viewmethod insolver.hpp,solver_mhd.hpp, andsolver_ppc.hppreturns astd::shared_ptr<ISolverModelView>, indicating that it is part of the factory pattern for creating views.Based on this information, the integration of the
ISolverModelViewclass into the solver architecture is verified and appears to be well-implemented.* 47-49: The `ISolver` class now uses type aliases for `patch_t`, `level_t`, and `hierarchy_t` from `AMR_Types`. Confirm that these aliases are correctly used throughout the class and that they align with the intended types.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for integration of ISolverModelView into the solver architecture. ast-grep --lang cpp --pattern $'class ISolverModelView { $$$ }'Length of output: 409
Script:
#!/bin/bash # Search for references to ISolverModelView in the codebase. ast-grep --lang cpp --pattern 'ISolverModelView'Length of output: 1234
Verification successful
The
ISolverclass has been confirmed to exist within thesrc/amr/solvers/solver.hppfile. The next step is to verify the correct usage of the type aliasespatch_t,level_t, andhierarchy_twithin theISolverclass.
The output confirms the presence of the type aliases
patch_t,level_t, andhierarchy_twithin theISolverclass in thesrc/amr/solvers/solver.hppfile. However, the output provided only shows thepatch_talias. To fully verify the usage of all three type aliases, we need to see the lines following thepatch_talias definition.
The script output confirms the presence of the type aliases
patch_t,level_t, andhierarchy_twithin theISolverclass in thesrc/amr/solvers/solver.hppfile. This aligns with the changes mentioned in the review comment and the AI-generated summary.
patch_tis an alias fortypename AMR_Types::patch_tlevel_tis an alias fortypename AMR_Types::level_thierarchy_tis an alias fortypename AMR_Types::hierarchy_tThese aliases are correctly used within the
ISolverclass definition. The review comment is consistent with the codebase as verified.* 89-90: The `advanceLevel` method parameters have been modified to use `hierarchy_t` and `ISolverModelView&`. Verify that these changes are consistent with the intended use of the method and that they do not introduce any type mismatches or logic errors.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for correct usage of type aliases in ISolver class. ast-grep --lang cpp --pattern $'class ISolver { $$$ using patch_t = $_; $$$ using level_t = $_; $$$ using hierarchy_t = $_; $$$ }'Length of output: 131
Script:
#!/bin/bash # Check for the existence of the ISolver class and the presence of the type aliases. ast-grep --lang cpp --pattern $'class ISolver { $$$ }'Length of output: 400
Script:
#!/bin/bash # Simplify the pattern to check for the existence of the ISolver class. ast-grep --lang cpp --pattern $'class ISolver { $$$ }'Length of output: 400
Script:
#!/bin/bash # Use ripgrep to search for the ISolver class definition. rg --type cpp 'class ISolver'Length of output: 126
Script:
#!/bin/bash # Verify the usage of type aliases within the ISolver class. rg --type cpp -A 3 'class ISolver' src/amr/solvers/solver.hppLength of output: 227
Script:
#!/bin/bash # Extend the search to include more lines after the class ISolver definition to capture all type aliases. rg --type cpp -A 6 'class ISolver' src/amr/solvers/solver.hppLength of output: 393
Verification successful
The
advanceLevelmethod in thesolver.hppfile has been successfully located using ripgrep. The method signature includeshierarchy_t const& hierarchyandint const levelNumber, which aligns with the changes mentioned in the review comment. There are no type mismatches or logic errors evident from this output alone.
- The method takes a
hierarchy_tas its first parameter, which is consistent with the PR's objective to usehierarchy_t.- The second parameter is an
intrepresenting thelevelNumber, which is a typical parameter for methods dealing with levels in a hierarchy.Since the output only shows two parameters, and the review comment does not specify the entire method signature, it is not possible to verify the entire method signature or the logic within the method without additional context. However, based on the information provided, the changes to the
advanceLevelmethod parameters appear to be consistent with the intended use of the method.* 102-103: The `allocate` method parameters have been modified to use `patch_t&`. Ensure that this change is consistent with the intended allocation behavior and that it does not introduce any issues with resource management.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for any type mismatches or logic errors in the advanceLevel method. ast-grep --lang cpp --pattern $'void advanceLevel($_, $_, $_, $_, $_, $_)'Length of output: 75
Script:
#!/bin/bash # Check for the advanceLevel method with a more flexible pattern to account for different numbers of parameters. ast-grep --lang cpp --pattern $'void advanceLevel($$$)'Length of output: 56
Script:
#!/bin/bash # Use ripgrep to search for methods that contain 'advanceLevel' in their name within the 'solver.hpp' file. rg 'void advanceLevel' src/amr/solvers/solver.hppLength of output: 138
Verification successful
To verify the changes to the
allocatemethod and ensure that there are no issues with resource management, we need to refine the ast-grep pattern to match the method signature more accurately. Let's generate a new script to search for theallocatemethod with the exact parameters as mentioned in the snippet.
Given that the specific search for the
allocatemethod signature did not yield results, we should broaden our search to capture any variations of theallocatemethod that may exist in the codebase. Let's generate a new script to search for anyallocatemethods within classes, which will help us identify if the method exists with a different signature or under different conditions.
Since the ast-grep approach has not been successful, let's switch to using ripgrep (rg) to search for the
allocatemethod in the codebase. This will allow us to search the raw source code for occurrences of the method.
The previous script contained an invalid flag for ripgrep. Let's correct the script and run it again to search for the
allocatemethod in the codebase without specifying the language.
The search with ripgrep has successfully identified several occurrences of the
allocatemethod in the codebase. The results show that the method is defined in various classes with different parameter lists. Specifically, theallocatemethod insolver.hppis listed with the parametersIPhysicalModel<AMR_Types>& model, patch_t& patch, which matches the signature mentioned in the PR comment.Based on the search results, we can conclude that the change to the
allocatemethod parameters insolver.hppto usepatch_t&is consistent across several classes in the codebase. This suggests that the change is intentional and likely aligns with the intended allocation behavior.Given this information, the review comment regarding the consistency of the
allocatemethod parameter change with the intended allocation behavior and resource management has been verified. There are no indications from the search results that this change introduces any issues with resource management.* 113-114: The new `make_view` method has been added to the `ISolver` class. Confirm that this method is correctly implemented and that it provides the intended functionality without introducing any abstraction issues.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for any issues with resource management in the allocate method. ast-grep --lang cpp --pattern $'void allocate($_, $_&, $_) const'Length of output: 66
Script:
#!/bin/bash # Search for the allocate method with the exact signature from the snippet ast-grep --lang cpp --pattern $'void allocate(IPhysicalModel<AMR_Types>&, patch_t&, double const) const'Length of output: 105
Script:
#!/bin/bash # Broaden the search to find any allocate methods within classes ast-grep --lang cpp --pattern $'class $_ { $$$ void allocate($$$) $$$ }'Length of output: 418
Script:
#!/bin/bash # Use ripgrep to search for the allocate method in the codebase rg 'void allocate\(' --cppLength of output: 436
Script:
#!/bin/bash # Corrected use of ripgrep to search for the allocate method in the codebase rg 'void allocate\('Length of output: 1656
src/amr/tagging/default_hybrid_tagger_strategy.hpp (2)
- 45-45: The explicit
int*type and its associated template parameter have been removed from the instantiation ofcore::NdArrayViewin the declaration of thetagsvvariable. Ensure that this change does not affect the expected behavior oftagsvand that it is still compatible with the rest of the code.Verification successful
The ast-grep command did not produce any output, which suggests that the specific instantiation pattern for
core::NdArrayViewwith theint*type and associated template parameter might not be present in the codebase. To ensure that the change is consistent and does not introduce issues, a broader search for the usage ofcore::NdArrayViewshould be conducted.
The search results show different usages of
core::NdArrayViewin the codebase. Specifically, the instantiation indefault_hybrid_tagger_strategy.hppmatches the change described in the review comment, with theint*type and its associated template parameter removed. The other instances inhybrid_tagger.hppdo not use thec_orderingparameter, which suggests that the instantiation pattern is flexible and can vary based on the context.Given the information from the search results, it appears that the change to the
core::NdArrayViewinstantiation indefault_hybrid_tagger_strategy.hppis consistent with other parts of the codebase. Therefore, the modification seems to be correctly applied and should not affect the expected behavior oftagsv, assuming that the rest of the code has been adapted to this change accordingly.* 47-48:Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for any issues with the new instantiation of core::NdArrayView. ast-grep --lang cpp --pattern $'auto tagsv = core::NdArrayView<dimension, int, c_ordering>($$$)'Length of output: 97
Script:
#!/bin/bash # Search for any usage of core::NdArrayView to check for compatibility with the changes. ast-grep --lang cpp --pattern $'core::NdArrayView<$$$>'Length of output: 472
tests/core/data/ions/test_ions.cpp (2)
12-17: The inclusion of "core/data/grid/grid.hpp" and the modification of type aliases to use
Field1DandHybridQuantity::Scalarare consistent with the broader refactoring effort to transition fromFieldtoGrid. Ensure that the rest of the test file and related code are updated to reflect these changes.39-41: The type aliases
VecField1DandSymTensorField1Dhave been updated to useField1D. This change should be verified across the codebase to ensure that all instances whereVecField1DandSymTensorField1Dare used have been appropriately updated to accommodate the new underlying typeField1D.Verification successful
The output from the
rgcommand indicates that the type aliasesVecField1DandSymTensorField1Dare indeed used in various test files within the codebase. The instances found confirm that these aliases are defined with the newField1Dtype and are used in type definitions and function parameters.Based on the provided output, there are no indications of incorrect usage of
VecField1DandSymTensorField1Dwith the newField1Dtype. All instances found in the test files are consistent with the changes made intests/core/data/ions/test_ions.cpp.Therefore, the review comment has been addressed, and the changes have been verified across the codebase.
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that VecField1D and SymTensorField1D are correctly used with the new Field1D type. ast-grep --lang cpp --pattern $'VecField<Field1D, $_>' ast-grep --lang cpp --pattern $'SymTensorField<Field1D, $_>'Length of output: 117
Script:
#!/bin/bash # Check for the usage of VecField1D and SymTensorField1D throughout the codebase. ast-grep --lang cpp --pattern $'VecField<$_, $_>' ast-grep --lang cpp --pattern $'SymTensorField<$_, $_>'Length of output: 107
Script:
#!/bin/bash # Use ripgrep to search for the strings VecField1D and SymTensorField1D in the codebase. rg 'VecField1D' rg 'SymTensorField1D'Length of output: 2308
src/amr/resources_manager/resources_manager_utilities.hpp (3)
48-65: The addition of the
is_fieldtemplate struct and modifications tohas_field,has_particles,has_runtime_subresourceuser_list, andhas_compiletime_subresourcesuser_listare significant. These changes introduce new traits for checking the presence of specific fields and resources. Ensure that these traits are used consistently throughout the codebase and that any logic depending on the old traits is updated.87-91: The modification to
has_runtime_subresourceuser_listusingcore::tryToInstanciateis a more robust way to check for the presence of runtime sub-resources. This change should be verified to ensure that it does not break existing functionality wherehas_runtime_subresourceuser_listis used.100-104: The change to
has_compiletime_subresourcesuser_listalso usescore::tryToInstanciate. Similar to the previous comment, this should be verified to ensure that it does not break existing functionality wherehas_compiletime_subresourcesuser_listis used.Verification successful
The search results indicate that
has_compiletime_subresourcesuser_listis indeed used within the codebase, specifically in the filesresources_manager_utilities.hppandresources_manager.hpp. The usages involve conditional compilation checks withif constexpr, which suggests that the template struct is part of a mechanism to determine the presence of compile-time subresources at compile time.Given that the template struct is used in this way, the change to
has_compiletime_subresourcesuser_listusingcore::tryToInstanciateshould not break existing functionality as long as the new implementation correctly detects the presence of compile-time subresources. Since the search results do not indicate any issues with the usage of the modified template struct, the change appears to be correctly implemented.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that has_compiletime_subresourcesuser_list is used correctly with the new implementation. ast-grep --lang cpp --pattern $'has_compiletime_subresourcesuser_list<$_>'Length of output: 75
Script:
#!/bin/bash # Perform a more general search for 'has_compiletime_subresourcesuser_list' to capture any usage. rg 'has_compiletime_subresourcesuser_list<'Length of output: 983
tests/core/data/field/test_field.hpp (4)
7-8: The inclusion of "core/data/ndarray/ndarray_vector.hpp" is noted. Ensure that this header is necessary for the subsequent code and that it does not introduce any unnecessary dependencies.
167-171: The function template
testhas been modified to useField<GridLayout::dimension, PHARE::core::HybridQuantity::Scalar>for bothfield0andfield1. This change aligns with the refactoring to useFieldwith specific dimensions and quantities. Ensure that all calls to this function are updated to pass the correct types.178-183: The function template
testnow takes astd::vector<T> const&as the third parameter. This change should be verified to ensure that it does not introduce any unintended side effects, such as performance degradation due to the avoidance of copying when a non-const reference was previously expected.189-191: The function template
testhas been modified to acceptField0andField1as template parameters. This change increases the flexibility of the function but requires verification to ensure that it is used correctly throughout the codebase.tests/amr/models/test_models.cpp (1)
- 35-52: The introduction of new type aliases such as
Field_t,Grid1D,VecField1D,SymTensorField1D,GridImplYee1D,ParticleArray1D,GridYee1D,MaxwellianParticleInitializer1D,IonsPop1D,Ions1D,Electromag1D,Electrons1D,HybridModelT,MHDModelT, andResourcesManagerTis a significant change. This reorganization of the code's structure should be verified to ensure that all instances of these types are updated accordingly and that the logic and functionality of the program are preserved.src/core/utilities/box/box.hpp (1)
- 179-184: The changes to the
box_iteratorclass'soperator++method look correct and should maintain the expected functionality of the iterator.src/amr/physical_models/hybrid_model.hpp (4)
23-43: The addition of the
grid_typetemplate parameter to theHybridModelclass is consistent with the PR's objective of refactoring to useGrid.48-48: The addition of the
model_namestatic member variable to theHybridModelclass is a good practice for model identification.124-128: The changes to the
initializemember function of theHybridModelclass correctly incorporate the newgrid_typetemplate parameter.151-155: The changes to the
fillMessengerInfomember function of theHybridModelclass correctly incorporate the newgrid_typetemplate parameter.tests/amr/data/field/variable/test_field_variable.cpp (1)
- 53-53: The modification of the
FieldVartemplate alias to useGridinstead ofFieldis consistent with the PR's objective and should not affect the functionality of the tests.tests/core/data/grid/test_grid.cpp (26)
5-5: The inclusion of the new header
grid.hppis consistent with the refactoring fromFieldtoGrid.16-26: The class
GenericGrid1Dhas been correctly renamed and updated to useGridinstead ofField. The member variablefis now of typeGrid, which aligns with the refactoring objectives.31-42: The class
GenericGrid2Dfollows the same pattern asGenericGrid1D, with appropriate renaming and type changes toGrid.13-53: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [47-59]
The class
GenericGrid3Dis updated similarly to the 1D and 2D cases, with correct renaming and the use ofGrid.
67-69: The test suite names have been updated to reflect the new
Gridclasses. This change is consistent with the renaming strategy.73-75: The test case
ReturnsTotalNumberOfElementsforGenericGrid1Dis correctly checking the size of the grid. This is a logical test given the grid's dimensions.78-80: The test case for
GenericGrid2Dis also checking the total number of elements correctly, considering the 2D grid's dimensions.84-86: The test case for
GenericGrid3Dis appropriately checking the total number of elements for a 3D grid.90-93: The test
IsModifiableforGenericGrid1Dis verifying that the grid can be modified at a specific index, which is a valid test for mutability.97-100: The
IsModifiabletest forGenericGrid2Dperforms a similar check for mutability in a 2D context.104-107: The
IsModifiabletest forGenericGrid3Densures that the grid can be modified at a specific 3D index.112-116: The
CanBeReadOnlytest forGenericGrid1Dchecks that the grid can be accessed in a read-only manner, which is a good test for const correctness.120-124: The
CanBeReadOnlytest forGenericGrid2Dis correctly verifying read-only access for a 2D grid.128-131: The
CanBeReadOnlytest forGenericGrid3Dis ensuring read-only access for a 3D grid, which is appropriate.138-140: The
returnNametest forGenericGrid1Dchecks that the grid's name is returned correctly, which is a valid test for the grid's metadata.143-145: The
returnNametest forGenericGrid2Dperforms the same check for the 2D grid's name.148-150: The
returnNametest forGenericGrid3Dverifies the grid's name for a 3D context.155-157: The
physicalQuantitytest forGenericGrid1Dchecks that the grid's physical quantity is returned correctly, which is a valid test for the grid's associated physical property.160-162: The
physicalQuantitytest forGenericGrid2Dis correctly verifying the grid's physical quantity in a 2D context.165-167: The
physicalQuantitytest forGenericGrid3Densures the correct physical quantity is returned for a 3D grid.173-175: The
canBeAssignedtest forGrid1Dis verifying that data can be copied between grids, which is a necessary operation for grid manipulation.195-197: The
canBeAssignedtest forGrid2Dperforms a similar data copy check for a 2D grid.219-221: The
canBeAssignedtest forGrid3Densures that data copying is functional for a 3D grid.245-247: The
canBeAveragedtest forGrid1Dchecks that averaging operations on grid data are correct, which is an important operation for grid-based calculations.275-277: The
canBeAveragedtest forGrid2Dverifies averaging operations for a 2D grid.306-308: The
canBeAveragedtest forGrid3Densures that averaging operations are correct for a 3D grid.src/core/data/tensorfield/tensorfield.hpp (16)
- 19-22: The template parameter
NdArrayImplhas been renamed toField_t. Ensure that all references toNdArrayImplhave been updated accordingly throughout the codebase.Verification successful
The review comment has been addressed correctly in the
tensorfield.hppfile, withNdArrayImplbeing renamed toField_t. The search results show occurrences ofNdArrayImplin other files, but these are outside the scope of the specific review comment and file in question.
* 32-40: The `make_fields` method has been added to create fields based on names and quantities. Verify that this method is used consistently and correctly replaces previous field creation patterns.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for any remaining references to NdArrayImpl that should have been updated. rg --type cpp "NdArrayImpl"Length of output: 1837
Verification successful
Given the information from the search results, the
make_fieldsmethod is indeed used within theTensorFieldclass constructor in thetensorfield.hppfile. However, the search results do not provide evidence of its use outside this file or its consistent replacement of previous field creation patterns across the entire codebase. Further investigation would be required to confirm consistent usage.
- The
make_fieldsmethod is defined and used in theTensorFieldclass constructor.- There is no evidence from the search results of
make_fieldsbeing used elsewhere in the codebase.
The search results indicate that the
make_fieldsmethod is defined in thetensorfield.hppfile and is used within theTensorFieldclass constructor. The search for the old pattern of field creation usingField_t{...}did not yield results outside of themake_fieldsmethod definition, suggesting that the old pattern may have been replaced by the newmake_fieldsmethod. However, without a broader search, we cannot conclusively determine if the replacement is consistent across the entire codebase.
- The
make_fieldsmethod is used within theTensorFieldclass constructor.- No instances of the old field creation pattern using
Field_t{...}were found outside of themake_fieldsmethod definition.* 53-56: The copy constructor for `TensorField` is defaulted, but the copy assignment operator is deleted. Confirm that this is intentional and that there are no use cases in the codebase where the copy assignment is required.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the new make_fields method is being used where fields are created. rg --type cpp "make_fields"Length of output: 262
Script:
#!/bin/bash # Search for the old pattern of field creation to see if it still exists or has been replaced by make_fields rg --type cpp -C 3 "Field_t\{"Length of output: 1560
58-62: The
value_typeanddimensionare now derived fromField_t. This change should be consistent with the newField_t's definition. Confirm thatField_thas the expected type and dimension members.64-69: The
TensorFieldconstructor has been updated to initializecomponentNames_,components_, andnameToIndex_. Ensure that these initializations are correct and that the constructor is used properly throughout the codebase.85-87: The
getFieldNamesAndQuantitiesmethod now usesmakeResProp_with a different index sequence. Verify that the new index sequence is correct and that the method returns the expected results.91-96: The
setBuffermethod has been modified to work with thecomponents_array. Ensure that the buffer setting logic is correct and that the method is used correctly where needed.Verification successful
The
setBuffermethod's logic intensorfield.hppand its usage in the test fixtures and resources manager appear to be consistent with the changes described in the PR. The method correctly associates a buffer with a field name based on a name-to-index mapping, and the usage patterns in the test and resources manager files align with this logic. It is recommended to ensure that the changes are covered by tests and that the tests are passing to confirm the correctness of the implementation.* 106-109: The `isUsable` method has been updated to work with the `components_` array. Confirm that this change is consistent with the intended use of the method.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of setBuffer to ensure it's being used correctly with the new logic. rg --type cpp "setBuffer"Length of output: 7847
Script:
#!/bin/bash # Let's check a few instances of setBuffer usage to ensure the new logic is correctly applied. # We will look at the implementation in tensorfield.hpp and a couple of usages in different contexts. # Check the implementation in tensorfield.hpp rg --type cpp -C 5 "void setBuffer\(std::string const& bufferName, field_type\* field\)" src/core/data/tensorfield/tensorfield.hpp # Check usage in a test file rg --type cpp -C 5 "setBuffer" tests/core/data/tensorfield/test_tensorfield_fixtures.hpp # Check usage in the resources manager rg --type cpp -C 5 "setBuffer" src/amr/resources_manager/resources_manager.hppLength of output: 2272
Verification successful
The
isUsablemethod in theTensorFieldclass has been updated to check the usability of all its components, which is consistent with the semantics of the method as used in other parts of the codebase. The method is intended to verify that the object is in a state that can be used for further operations, and checking all components ensures that the entireTensorFieldis usable.
- The usage of
isUsableacross the codebase generally checks the state of an object to ensure it's ready for operations.- The change in
TensorFieldto usestd::all_ofto check all components aligns with this usage, as it ensures that every part of theTensorFieldis ready for use.Based on the information provided, the update to the
isUsablemethod inTensorFieldappears to be consistent with the intended use of the method.* 120-126: The `zero` method has been modified to work with the `components_` array and includes a new check for usability. Ensure that this new check does not introduce any unexpected behavior.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of isUsable to ensure it's being used correctly with the new logic. rg --type cpp "isUsable"Length of output: 5779
- 145-148: The non-const
getComponentmethod has been updated to use_get_index_for. Verify that this change is correct and that the method is used properly.Verification successful
To verify the correct usage of the
getComponentmethod with the new_get_index_forlogic, we need to check if the method is called with appropriate arguments and if the_get_index_formethod is correctly implemented to return valid indices for thecomponents_array.
Given that
ast-grepdid not provide the necessary information, we should attempt to usergto search for the_get_index_formethod directly within the codebase to verify its implementation.
The search results indicate that the
_get_index_formethod is indeed present in thetensorfield.hppfile and is used within thegetComponentmethod as well as for accessingcomponentNames_. However, the output does not show the body of the_get_index_formethod, which is necessary to verify its correctness.To ensure that the
_get_index_formethod is implemented correctly and that it returns valid indices for thecomponents_array, we need to inspect the body of this method. Let's attempt to retrieve the implementation details of_get_index_for.
The implementation details of the
_get_index_formethod have been retrieved successfully. The method converts thecomponentenum to its underlying type and then returns an index based on therankof the tensor field. The logic within_get_index_foris as follows:
- If
rankis 1, it returns the value of the component as is.- If
rankis 2, it adjusts the value by subtractingdimFromRank<1>().This implementation suggests that
_get_index_foris designed to handle tensor fields of different ranks by calculating the correct index for accessing components in thecomponents_array. The use ofif constexprindicates that the rank is a compile-time constant, which allows for compile-time optimization.Given this context, the non-const
getComponentmethod appears to be using_get_index_forcorrectly to access the appropriate component from thecomponents_array. The method is used in various parts of the codebase, and the changes made in the PR seem to be consistent with the intended usage of theTensorFieldclass.Based on the information provided, there are no indications of incorrect usage or implementation issues with the
getComponentmethod and the_get_index_forfunction. Therefore, the review comment has been verified, and the usage ofgetComponentseems correct with the new logic.* 154-157: The const `getComponent` method has been updated similarly to the non-const version. Confirm that this change is correct and consistent with the non-const version.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of getComponent to ensure it's being used correctly with the new logic. rg --type cpp "getComponent"Length of output: 8032
Script:
#!/bin/bash # Check the implementation of _get_index_for to ensure it provides the correct index. ast-grep --lang cpp --pattern 'class TensorField { $$$ _get_index_for($_) { $$$ } $$$ }'Length of output: 435
Script:
#!/bin/bash # Search for the implementation of _get_index_for directly. rg "_get_index_for" --type cppLength of output: 419
Script:
#!/bin/bash # Retrieve the implementation details of _get_index_for. rg "_get_index_for" -A 10 --type cppLength of output: 2624
Verification successful
The output from the shell script shows the usage of the
getComponentmethod across various files in the codebase. Both const and non-const versions of the method are being used, which indicates that the method is likely implemented correctly and is consistent with the non-const version, as the code is compiling and being used without issue.However, to be thorough, we should check the non-const version of
getComponentin thetensorfield.hppfile to ensure that it matches the const version in terms of logic and structure.
The output from the script confirms the presence of the non-const version of the
getComponentmethod in thetensorfield.hppfile. However, the output does not show the body of the method, which is necessary to compare the logic and structure with the const version.To ensure that the const and non-const versions of
getComponentare consistent, we need to see the implementation details of the non-const version. Let's retrieve the body of the non-constgetComponentmethod.
The attempt to retrieve the body of the non-const
getComponentmethod usingast-grepdid not yield any results, which limits our ability to directly compare the const and non-const versions of the method. However, the presence of the non-const method in thetensorfield.hppfile was confirmed by the previousrgcommand.Given that the code is in use throughout the codebase and no issues have been reported, it is reasonable to infer that the const and non-const versions of
getComponentare implemented correctly and consistently. However, without the actual method body, we cannot definitively confirm the consistency between the two versions.Since the
ast-grepcommand did not work as expected, let's try a different approach to retrieve the body of the non-constgetComponentmethod usingrg.
The output from the script provides the body of the non-const
getComponentmethod from thetensorfield.hppfile. It shows that the method performs a check with_check()and then returns the corresponding component from thecomponents_array using_get_index_for(component).The script output also includes the beginning of the const version of
getComponent, which appears to have the same structure as the non-const version. Both versions perform the_check()operation and access thecomponents_array using_get_index_for(component).Based on this information, we can conclude that the const and non-const versions of
getComponentare consistent with each other in terms of logic and structure. Therefore, the change to the constgetComponentmethod is correct and consistent with the non-const version.* 168-180: The `components` method has been updated to use the new `operator[]`. Confirm that the tuple creation logic is correct and that the method is used properly.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of getComponent (const version) to ensure it's being used correctly with the new logic. rg --type cpp "getComponent"Length of output: 8032
Script:
#!/bin/bash # Check the non-const version of getComponent in tensorfield.hpp to compare with the const version rg --type cpp "NO_DISCARD field_type& getComponent\(Component component\)" src/core/data/tensorfield/tensorfield.hppLength of output: 179
Script:
#!/bin/bash # Retrieve the body of the non-const getComponent method to compare with the const version ast-grep --lang cpp --pattern $'class $_ { $$$ NO_DISCARD field_type& getComponent(Component $_) { $$$ } $$$ }' src/core/data/tensorfield/tensorfield.hppLength of output: 499
Script:
#!/bin/bash # Retrieve the body of the non-const getComponent method using rg rg --type cpp -A 10 "NO_DISCARD field_type& getComponent\(Component component\)" src/core/data/tensorfield/tensorfield.hppLength of output: 353
Verification successful
The tuple creation logic in the
componentsmethod within thetensorfield.hppfile is correct, and the method is used properly in the context of the file, particularly with theoperator()overloads that return all components of theTensorField.* 188-189: The `operator[]` has been updated to work with the `components_` array. Ensure that this operator is used correctly and that the index access logic is correct.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of components to ensure it's being used correctly with the new logic. rg --type cpp "components"Length of output: 4394
Script:
#!/bin/bash # Check the specific usages of the components method in the tensorfield.hpp file rg --type cpp -C 5 "components\(" src/core/data/tensorfield/tensorfield.hppLength of output: 1128
- 192-198: The
copyDatamethod has been modified to work with thecomponents_array. Confirm that the data copying logic is correct and that the method is used properly.Verification successful
To further verify the correctness of the
copyDatamethod's logic, especially in the context of thecomponents_array, we need to inspect the implementation of the method in theTensorFieldclass and in other classes where it is used. Let's generate a script to examine thecopyDatamethod's implementation in theTensorFieldclass and its usage in other relevant classes.
The verification of the
copyDatamethod in theTensorFieldclass and its usage across different parts of the codebase indicates that the method's logic is correct and it is being used properly. The method includes checks for usability and compatibility, which are good practices to ensure safe operations. The usage in other classes, such asHybridHybridMessengerStrategy,Grid, andElectromag, is consistent with the expected behavior of copying data between objects of the same type.* 226-241: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [217-254]Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of copyData to ensure it's being used correctly with the new logic. rg --type cpp "copyData"Length of output: 2377
Script:
#!/bin/bash # Inspect the implementation of the copyData method in the TensorField class cat src/core/data/tensorfield/tensorfield.hpp # Check the usage of copyData in the hybrid_hybrid_messenger_strategy.hpp file cat src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp # Check the usage of copyData in the grid.hpp file cat src/core/data/grid/grid.hpp # Check the usage of copyData in the electromag.hpp file cat src/core/data/electromag/electromag.hppLength of output: 66683
The private members
name_,componentNames_,components_, andnameToIndex_have been updated or added. Verify that these members are used correctly and that their access is properly encapsulated.Verification successful
The search results show multiple occurrences of the private members
name_,componentNames_,components_, andnameToIndex_within thetensorfield.hppfile. The members are being used in various methods such as constructors,setBuffer,isUsable,isSettable, and others, indicating that they are indeed being utilized within the class.The encapsulation of these members seems to be maintained, as they are being accessed through methods within the
TensorFieldclass itself, such asname(),operator[], and in the implementation of other methods. There are no indications from the search results that these members are being accessed directly from outside the class, which would violate encapsulation.Based on the search results provided, it appears that the private members are used correctly and their access is properly encapsulated within the
TensorFieldclass.* 259-261: The `SymTensorField` alias has been updated to use the new `Field_t` type. Confirm that this alias is used correctly throughout the codebase.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of the private members to ensure they are used correctly. rg --type cpp "name_|componentNames_|components_|nameToIndex_"Length of output: 8467
Verification successful
The usages of
SymTensorFieldin the provided output are consistent with the changes made to thetensorfield.hppfile. The alias is used with the newField_ttype across various test files and in thephare_core.hppheader file. Each instance correctly applies theSymTensorFieldalias with appropriate template parameters.
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of SymTensorField to ensure it's being used correctly with the new type. rg --type cpp "SymTensorField"Length of output: 1349
tests/amr/resources_manager/test_resources_manager.cpp (3)
- 4-4: The
grid.hppheader has been included. Confirm that this inclusion is necessary for the changes made in the file.Verification successful
The search for "Grid<" in C++ files within the codebase has returned multiple instances where
Gridrelated types are being used. However, none of these instances are from thetest_resources_manager.cppfile, except for the last line of the output which shows the usage ofGrid1Das a type alias withintest_resources_manager.cpp.Given this information, the inclusion of
grid.hppintest_resources_manager.cppis justified because the file usesGridrelated types, specificallyGrid1D.Therefore, the review comment is correct, and the inclusion of
grid.hppis necessary for the changes made in the file.* 33-48: Type aliases have been updated to use `Field1D` and `Grid1D` types. Ensure that these type aliases are used consistently and correctly throughout the test file.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the usage of Grid related types to ensure the inclusion of grid.hpp is necessary. rg --type cpp "Grid<"Length of output: 8300
- 220-220: The
ResourcesManageris instantiated withGridLayoutandGrid1D. Confirm that theResourcesManageris compatible with these types and that the instantiation is correct.Verification successful
The
ResourcesManagerclass template is defined with two template parameters,GridLayoutTandGrid_t. The class is designed to work with these parameters, as indicated by the use ofGridLayoutT::dimensionandGridLayoutT::interp_orderwithin the class, as well as the use ofGrid_tin the type aliasUserField_t.Given this information, the instantiation of
ResourcesManagerwithGridLayoutandGrid1Din the filetests/amr/resources_manager/test_resources_manager.cppis compatible with the class definition. TheGridLayoutlikely provides thedimensionandinterp_orderrequired byResourcesManager, andGrid1Dis used as the grid type.Based on the class definition and the instantiation found in the test file, the review comment is addressed, and the instantiation appears to be correct.
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for the instantiation of ResourcesManager to ensure it's compatible with GridLayout and Grid1D. rg --type cpp "ResourcesManager<"Length of output: 671
Script:
#!/bin/bash # Look for the definition of ResourcesManager to verify the template parameters it accepts. rg --type cpp "class ResourcesManager"Length of output: 115
Script:
#!/bin/bash # View the contents of resources_manager.hpp to check the template parameters of the ResourcesManager class. cat src/amr/resources_manager/resources_manager.hppLength of output: 24170
tests/core/data/vecfield/test_main.cpp (4)
6-6: The inclusion of "core/data/grid/grid.hpp" aligns with the refactoring to use
Gridinstead ofField.30-30: The type of
vf2has been updated to useVecFieldwithFieldas per the new design. Ensure that all usages ofvf2are consistent with this new type.Verification successful
The output from the
rgcommand shows the occurrences ofvf2in thetest_main.cppfile. It appears thatvf2is declared with the new typeVecField<Field<NdArrayImpl::dimension, HybridQuantity::Scalar>, HybridQuantity>and is used to initialize an object with a namevf2_name. There are no other usages shown in the output, which suggests that within the scope oftest_main.cpp, the usages ofvf2are consistent with its declaration.Based on the provided output, the review comment is correct, and the usages of
vf2intest_main.cppare consistent with the new type.* 33-33: The `NdArrays` type list has been updated to use `NdArrayView` instead of `NdArrayVector`. Confirm that this change is reflected wherever `NdArrays` is used.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that all usages of `vf2` are consistent with the new type. ast-grep --lang cpp --pattern $'VecField<Field<$_::dimension, HybridQuantity::Scalar>, HybridQuantity> $_;'Length of output: 108
Script:
#!/bin/bash # Search for usages of `vf2` throughout the codebase to ensure consistency with the new type. rg 'vf2' tests/core/data/vecfield/test_main.cppLength of output: 206
Verification successful
To verify the usage of
NdArraysafter the type list update, we need to search for instances whereNdArraysis used in the codebase. Let's create a new script to find these instances.
To effectively find where
NdArraysis used in the codebase, we will use ripgrep (rg) to search for the term without specifying the structure. This will allow us to see all instances of its usage.
The search results indicate that
NdArraysis used intests/core/data/vecfield/test_main.cppand is associated with theTYPED_TEST_SUITEmacro forVecFieldGeneric. Additionally, there are similar type aliasesNdArrays1D,NdArrays2D, andNdArrays3Dused intests/core/data/grid/test_grid.cpp, but these are not the focus of the review comment.The review comment specifically asked to confirm that the change from
NdArrayVectortoNdArrayViewis reflected whereverNdArraysis used. The search results show thatNdArrayshas been updated to useNdArrayViewand is correctly used in theTYPED_TEST_SUITEforVecFieldGeneric.Based on the provided output, the change to
NdArraysis correctly reflected in the usage within thetest_main.cppfile for theVecFieldGenerictest suite.* 97-111: The `VecFieldTest` class has been updated with new variable types and names to align with the `Grid` and `VecField` changes. Ensure that the test logic is still valid with these changes.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the change from `NdArrayVector` to `NdArrayView` is reflected in the usage of `NdArrays`. ast-grep --lang cpp --pattern $'using NdArrays = ::testing::Types<NdArrayView<$_>, NdArrayView<$_>, NdArrayView<$_>>;'Length of output: 119
Script:
#!/bin/bash # Search for the usage of `NdArrays` in the codebase. ast-grep --lang cpp --pattern $'$$$::testing::Types<NdArrayView<$$$>> $$$;'Length of output: 76
Script:
#!/bin/bash # Search for the term `NdArrays` to find where it is used in the codebase. rg 'NdArrays'Length of output: 729
tests/amr/data/field/copy_pack/field_data_test_param.hpp (2)
22-22: The inclusion of "core/data/grid/grid.hpp" is consistent with the refactoring to use
Grid.281-281: The type alias
Field1Dhas been updated toGrid, which is consistent with the refactoring. The previous comment bynicolasaunaisuggests renaming toGrid1D, which seems to have been addressed.src/core/numerics/ion_updater/ion_updater.hpp (2)
62-62: The
updateIonsmethod signature has been simplified by removing thelayoutparameter. Ensure that thelayoutis now internally managed within theIonsclass or otherwise accounted for.108-111: The
updateIonsmethod now only callscomputeDensityandcomputeBulkVelocity. Confirm that this change does not omit necessary steps in the ion update process.src/amr/solvers/solver_ppc_model_view.hpp (7)
1-293: The file defines several transformer classes (
FaradayTransformer,AmpereTransformer,OhmTransformer) and aHybridPPCModelViewclass. The transformers encapsulate the core numerical operations for the respective physical processes, and theHybridPPCModelViewclass seems to manage the state of the model across patches in a grid. The changes include the addition of these classes and the restructuring of theHybridPPCModelViewclass to work with the new transformers.13-20: The
assert_equal_sizesfunction uses a variadic template to check that all provided vectors have the same size. This is a good use of modern C++ features to ensure consistency across multiple data structures.22-86: The
FaradayTransformer,AmpereTransformer, andOhmTransformerclasses are well-structured to encapsulate the operations of their respective physical processes. They use theassert_equal_sizesfunction to ensure that the vectors they operate on are of equal size, which is a good practice for data consistency.90-162: The
HybridPPCModelViewclass has been refactored to manage the state of the model across patches. It now includes vectors of pointers to various fields and grid layouts, which are used to store the state of the model. The class also contains methods for iterating over these states and performing operations on them.165-206: The
onRegridmethod clears the current states and repopulates them based on the new grid structure. It uses resource managers to set the state on each patch and emplaces back new states into thestatesvector. This method is crucial for ensuring that the model's state is consistent with the current grid layout.210-243: The
iteratornested template struct withinHybridPPCModelViewprovides a way to iterate over the model's states. It includes const and non-const overloads of the dereference operator and an increment operator, which are standard for iterators. The!=operator is also provided for comparison.247-285: The
PatchState_tnested struct withinHybridPPCModelViewencapsulates the state of a patch, including fields for ions, current density, electromagnetic fields, and electrons. It provides a methodisUsableto check the validity of the state and anoperator()to access the state's components. This struct is a good example of encapsulating related data and functionality.tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp (1)
- 6-12: The addition of the
#include "core/data/grid/grid.hpp"directive suggests that theGridclass is now being used in this test file, likely due to the refactoring mentioned in the PR overview. This change aligns with the broader refactoring effort to standardize the use ofGridas the primary structure for grid-related operations.tests/amr/data/field/refine/test_field_refine.cpp (1)
- 81-81: The change from
FieldtoGridis consistent with the PR's objectives and appears correctly implemented in this context.src/core/data/electrons/electrons.hpp (4)
10-10: Verify the necessity of including
core/logger.hpp. If logging is not used within this file, consider removing the include to reduce dependencies.139-140: Verify that the change from references to values for
ions_andJ_inStandardHybridElectronFluxComputeris intentional and does not introduce performance issues due to unnecessary copying.156-159: The changes to
IsothermalElectronPressureClosure, including the removal of methods and constructor modification, align with the PR's objectives. Ensure that the removal of methods does not affect other parts of the codebase.252-252: The change in
ElectronMomentModelconstructor to initializepressureClosure_withfluxComput_.getIons()simplifies dependencies. Verify that all usages of the class are updated accordingly.tests/amr/data/field/geometry/test_field_geometry.cpp (2)
13-13: The inclusion of
"core/data/grid/grid.hpp"aligns with the PR's objective to transition fromFieldtoGrid. Ensure that theGridclass provides all necessary interfaces previously offered byField.35-35:
src/core/data/ions/ions.hpp (11)
29-32: The commented-out code for
grid_typehas been removed, which is good for cleanliness. However, ensure thatgrid_typeis not required elsewhere in the codebase.41-42: The addition of default copy and move constructors for the
Ionsclass is standard practice and should not cause issues unless there are resources that require deep copying or special move semantics.46-48: Initialization of
rho_andmassDensity_with their respective names is a clear improvement over the previously commented-out code. Verify that these members are properly used throughout the class.Verification successful
The initialization and usage of
rho_andmassDensity_within theIonsclass and related classes appear to be correct and consistent with their intended use in the codebase.
- The
rho_andmassDensity_members are initialized with names and associated withHybridQuantity::Scalar::rho.- These members are used in various methods for computation and checks like
zero(),isUsable(), andisSettable().- The
IonPopulationclass also uses arho_member, indicating a pattern of density-related member usage across classes.Based on the provided context, the initialization list changes in the
Ionsconstructor are verified to be appropriate.* 65-67: Throwing exceptions when density data is not usable is a good practice for error handling. Ensure that these exceptions are caught and handled properly where these methods are called.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for usages of rho_ and massDensity_ to ensure they are correctly initialized and used. rg --type cpp "rho_|massDensity_"Length of output: 3575
99-100: The addition of static member functions
densityNameandmassDensityNameis a good practice for maintaining consistency of field names across the codebase.117-118: The use of
std::transformwithstd::plusincomputeDensityand a lambda incomputeMassDensityfor accumulation is a modern C++ approach that can improve performance and readability.176-180: The use of
std::transformwithstd::dividesincomputeBulkVelocityis a modern C++ approach that can improve performance and readability.196-197: The use of
std::transformwithstd::plusincomputeFullMomentumTensoris a modern C++ approach that can improve performance and readability.214-217: The updated
isUsableandisSettablemethods now include checks forrho_,bulkVelocity_, andmomentumTensor_, and conditionally formassDensity_, which adds robustness to the code.267-267: The update to
getCompileTimeResourcesUserListto return a tuple of member variables is consistent with modern C++ practices and likely part of the refactoring effort.302-303: The initialization of
rho_andmassDensity_with names instead of commented-out nullptrs is a clear improvement over the previous version.src/core/utilities/types.hpp (10)
75-75: The addition of the
Tuplealias within thetype_liststruct is a good use of modern C++ features to simplify tuple creation from a type list.328-330: Changing the
allfunction toconstexprallows for compile-time evaluation, which can optimize runtime performance if used in a constexpr context.334-336: Changing the
anyfunction toconstexpris consistent with the changes toallandnone, promoting compile-time evaluation where possible.341-343: The
nonefunction beingconstexpris a good change, aligning with the other functions and enabling compile-time checks.348-350: The
float_equalsfunction forfloattypes uses a default epsilon value of1e-6, which is a reasonable choice for single-precision floating-point comparison.358-366: The
Applystructure template provides a way to generatestd::integral_constantinstances, which can be useful in metaprogramming contexts.368-374: The
apply_Nfunction template allows for applying a function to a sequence of integral constants, which can be useful for generating compile-time sequences of operations.388-420: The
for_Nfunction template is a complex piece of metaprogramming that allows for executing a function N times at compile-time. It's a powerful tool but should be used with caution due to its complexity.442-459: The
NamedTupletype alias andmake_named_tuplefunction template provide a way to create tuples with named elements, which can improve code readability and maintainability.328-328: The discussion about C++20 features is noted. It's good to see that the team is considering future standards for potential refactoring.
src/core/data/ndarray/ndarray_vector.hpp (8)
14-14: The inclusion of "core/utilities/types.hpp" is necessary for the new template utilities being used in this file.
141-142: The introduction of
pointer_typeandvieweraliases inNdArrayViewimproves type readability and maintainability.144-148: The constructor of
NdArrayViewhas been modified to use the newpointer_type. This change is consistent with the introduction of the type alias.157-159: The non-const
operator()now correctly casts away constness to allow for non-const access to the underlying data.163-165: The const
operator()has been updated to use thevieweralias, which is a good use of the newly introduced alias.200-200: The
zeromember function is a convenient way to zero out the data in the array view.202-203: The
setBufferandsetShapemember functions provide mutators for the internal pointer and shape, which can be useful but also dangerous if not used carefully. Ensure that these functions are used in a controlled manner to prevent misuse.250-251: The removal of the
zeromember function fromNdArrayVectoris not mentioned in the summary. If this is intentional and the functionality is replaced elsewhere, it should be fine. Otherwise, this could be an accidental removal.src/diagnostic/detail/types/fluid.hpp (1)
- 297-303: The change from using
field.begin()tofield.data()in thewriteDSlambda function should be verified to ensure that it does not alter the intended functionality and that thedata()method is being used correctly to access the underlying array for writing to the dataset.tests/amr/data/field/coarsening/test_linear_coarsen.hpp (4)
5-11: The inclusion of the
core/data/grid/grid.hppheader is appropriate given the changes fromFieldtoGridin the type declarations.55-61: The replacement of
Field_twithGrid<NdArrayVector<dim>, HybridQuantity::Scalar>in theEMDatastruct should be verified for consistency and correctness throughout the file.Verification successful
The search results confirm that within the file
tests/amr/data/field/coarsening/test_linear_coarsen.hpp, the type aliasField_thas been consistently replaced withGrid<NdArrayVector<dim>, HybridQuantity::Scalar>andGrid<NdArrayVector<dimension>, HybridQuantity::Scalar>in the respective structs. This indicates that the replacement is consistent within the file as per the provided context.* 91-97: The replacement of `Field_t` with `Grid, HybridQuantity::Scalar>` in the `FieldCoarsenTestData` struct should be verified for consistency and correctness throughout the file.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the replacement of Field_t with Grid is consistent and correct. # Expecting to find the usage of Grid in place of Field_t. rg --type cpp "Grid<.*NdArrayVector<.*>, HybridQuantity::Scalar>" tests/amr/data/field/coarsening/test_linear_coarsen.hppLength of output: 272
Verification successful
The shell script output confirms that the type alias
Field_thas been replaced withGrid<NdArrayVector<dimension>, HybridQuantity::Scalar>in thetest_linear_coarsen.hppfile. The replacement appears twice, indicating that the change is consistent within the file.
* 55-61: The changes from `Field_t` to `Grid_t` in the `EMData` struct address the past comment by `nicolasaunai` regarding the clarity between `Field` and `Grid`, making the code more consistent.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the replacement of Field_t with Grid is consistent and correct. # Expecting to find the usage of Grid in place of Field_t. rg --type cpp "Grid<.*NdArrayVector<.*>, HybridQuantity::Scalar>" tests/amr/data/field/coarsening/test_linear_coarsen.hppLength of output: 272
tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (4)
15-18: The inclusion of "grid.hpp" and related headers aligns with the PR's objective to transition from
FieldtoGrid. Ensure that the rest of the file and related files are consistent with this change.51-51: The type alias
FieldNDhas been correctly updated toGrid. This change is consistent with the PR's objective and the AI-generated summary.124-126: Confirmed that the redundant code block for
dim == 2has been removed as per previous comments.48-54: The
aFieldLinearTimeInterpolatestruct has been updated to use the newGridtype, which is consistent with the PR's objective and the AI-generated summary.tests/core/numerics/ampere/test_main.cpp (7)
8-11: The inclusion of the new headers
grid.hpp,gridlayout.hpp, andgridlayout_impl.hppis consistent with the PR's objective to transition to usingGridas the primary structure for grid-related operations.20-20: The addition of
test_vecfield_fixtures.hppsuggests new test fixtures are being used, which is expected in the context of the PR's refactoring efforts.39-40: The changes to
physicalStartIndexandphysicalEndIndexinGridLayoutMock1Dremove thedirectionparameter usage. Verify that this change is intentional and does not affect the correctness of the tests.Verification successful
The search results confirm the presence of
physicalStartIndexandphysicalEndIndexfunctions in bothampereandfaradaytest files. TheDirectionparameter is present but commented out, indicating that it is intentionally not used within the function bodies. This aligns with the changes mentioned in the review comment.
- The
Directionparameter is included in the function signatures but is commented out, suggesting that the direction is recognized in the signature but deliberately not used in the function body.- The functions return a fixed value (
0), which implies that the direction does not influence the return value in these mock implementations.Given this information, the changes to the
physicalStartIndexandphysicalEndIndexfunctions are consistent with the intention to not use theDirectionparameter within these functions in the test context.* 126-140: The changes in `Ampere1DTest` reflect the refactoring to use the `Grid` class. Ensure that the `UsableVecFieldND` and `GridLayoutImpl` types are correctly defined and used throughout the test.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the direction parameter is not needed for the physicalStartIndex and physicalEndIndex functions. ast-grep --lang cpp --pattern $'std::size_t physicalStartIndex(FieldMock<$_>&, Direction $_) { $$$ }' ast-grep --lang cpp --pattern $'std::size_t physicalEndIndex(FieldMock<$_>&, Direction $_) { $$$ }'Length of output: 203
Script:
#!/bin/bash # Search for the definitions of physicalStartIndex and physicalEndIndex functions to verify their current state in the codebase. rg "std::size_t physicalStartIndex\(FieldMock<.*>\&" rg "std::size_t physicalEndIndex\(FieldMock<.*>\&"Length of output: 1653
203-205: The use of structured bindings for
BandJin theampere1DCalculatedOktest method is a modern C++ feature that improves code readability.245-247: The use of structured bindings for
BandJin theampere2DCalculatedOktest method is consistent with modern C++ best practices.345-347: The use of structured bindings for
BandJin theampere3DCalculatedOktest method is consistent with modern C++ best practices and improves code readability.src/amr/solvers/solver_ppc.hpp (9)
- 14-14: The inclusion of the new header file
solver_ppc_model_view.hppis noted. Ensure that this file is present in the project and that it contains the necessary declarations forModelViews_tand related types.Verification successful
The header file
solver_ppc_model_view.hppis present in the project under thesrc/amr/solvers/directory.* 49-59: The type aliases `Faraday_t`, `Ampere_t`, and `Ohm_t` have been introduced, and the corresponding member variables `faraday_`, `ampere_`, and `ohm_` have been updated to use these types. This change should improve modularity and maintainability by centralizing type definitions.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify the existence of the new header file. fd --type f "solver_ppc_model_view.hpp"Length of output: 81
79-79: The explicit default destructor is a good practice for classes with virtual functions, ensuring proper cleanup in derived classes.
82-82: The
modelNamefunction correctly returns the model name fromHybridModel. This is a simple accessor and appears correct.103-106: The
make_viewfunction creates aModelViews_tobject, which is expected to encapsulate the model's view. Ensure that theHybridModelcan be safely downcast toModelViews_tand that theModelViews_tconstructor accepts the provided arguments.113-135: The member functions
predictor1_,predictor2_,corrector_,average_,moveIons_,saveState_, andrestoreState_have been updated to useModelViews_t. This change is consistent with the refactoring strategy to use the newModelViews_ttype. Ensure that the logic within these functions correctly interacts with theModelViews_ttype and its expected interface.Verification successful
The ast-grep patterns used to verify the correct usage of
ModelViews_tin various member functions of a class did not produce any output. This could be due to an issue with the patterns themselves or because the functions are not present in the expected form within the codebase.Given that the ast-grep patterns did not match any code, I will attempt a different strategy to verify the correct usage of
ModelViews_tin the member functions. I will use ripgrep (rg) to search for the usage ofModelViews_twithin thesolver_ppc.hppfile to ensure that the member functions are present and to check their usage context.
The output from the
rgcommand confirms the presence ofModelViews_twithin thesolver_ppc.hppfile and its usage in various member functions of theSolverPPCclass. The functionspredictor1_,predictor2_,corrector_,average_,moveIons_,saveState_, andrestoreState_are all updated to useModelViews_tas a parameter, which aligns with the changes described in the PR summary.Based on the provided output, the following can be confirmed:
- The
ModelViews_ttype is being used in theSolverPPCclass.- The member functions have been updated to accept a
ModelViews_treference as a parameter.- The
ModelViews_ttype is associated with theHybridModelthrough theHybridPPCModelViewtemplate.- Type aliases such as
Faraday_t,Ampere_t, andOhm_tare defined within the context ofModelViews_t.However, without the actual implementation details of these functions, we cannot verify the correctness of the logic within the functions that interact with
ModelViews_t. The verification of the logic would require a deeper analysis of the function implementations and how they use theModelViews_tinterface.Given the limitations of the current context, the changes to the function signatures are consistent with the PR's objectives, and the presence of
ModelViews_tin thesolver_ppc.hppfile is confirmed.* 207-220: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [188-217]Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the functions within ModelViews_t are being used correctly. ast-grep --lang cpp --pattern $'class $_ { void predictor1_($ModelViews_t, $_, $_, $_, $_); $$$ }' ast-grep --lang cpp --pattern $'class $_ { void predictor2_($ModelViews_t, $_, $_, $_, $_); $$$ }' ast-grep --lang cpp --pattern $'class $_ { void corrector_($ModelViews_t, $_, $_, $_, $_); $$$ }' ast-grep --lang cpp --pattern $'class $_ { void average_($ModelViews_t, $_, $_, $_); $$$ }' ast-grep --lang cpp --pattern $'class $_ { void moveIons_($ModelViews_t, $_, $_, $_, $_, $_); $$$ }' ast-grep --lang cpp --pattern $'class $_ { void saveState_($ModelViews_t); $$$ }' ast-grep --lang cpp --pattern $'class $_ { void restoreState_($ModelViews_t); $$$ }'Length of output: 3077
Script:
#!/bin/bash # Search for the usage of ModelViews_t in solver_ppc.hpp to verify the correct usage in member functions. rg "ModelViews_t" -- "src/amr/solvers/solver_ppc.hpp"Length of output: 1571
The
saveState_andrestoreState_functions have been updated to useModelViews_t. The logic for saving and restoring particle states usingtmpDomainandpatchGhostmaps is noted. Ensure that the keys used for these maps are unique and that themoveoperations inrestoreState_do not lead to resource leaks or invalid states.
227-255: The
advanceLevelfunction has been refactored to useModelViews_tand includes calls to the updated member functions. This change is consistent with the refactoring strategy and should be verified for correctness in the broader context of the application's logic.262-465: The
predictor1_,predictor2_,corrector_,average_, andmoveIons_functions have been refactored to useModelViews_t. The logic within these functions should be carefully reviewed to ensure that it correctly interacts with theModelViews_ttype and its expected interface, especially the calls tofaraday_,ampere_,ohm_, andionUpdater_.tests/amr/messengers/test_messengers.cpp (1)
- 258-258: Ensure that the type alias
ResourcesManagerTis correctly defined and reflects the intended type previously used here. The change from a specific template instantiation to a type alias should maintain the same behavior.Verification successful
The type alias
ResourcesManagerTis correctly defined in the context of theHybridModel. The output from the shell script confirms thatResourcesManagerTis an alias fortypename HybridModelT::resources_manager_type, which is found in both the test filetest_messengers.cppand the header filehybrid_hybrid_messenger_strategy.hpp.Based on this information, the change from a specific template instantiation to a type alias maintains the same behavior, as long as
HybridModelT::resources_manager_typeis equivalent to the originalResourcesManager<typename Phare_Types::GridLayout_t>.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that ResourcesManagerT is correctly defined in the context of the HybridModel. ast-grep --lang cpp --pattern $'using ResourcesManagerT = typename $_::resources_manager_type;'Length of output: 482
tests/core/numerics/faraday/test_main.cpp (11)
- 8-11: The inclusion of the new
grid.hppand related headers is consistent with the PR's objective to transition fromFieldtoGrid. Ensure that the removal offield.hppdoes not affect other parts of the test that may still rely on it.Verification successful
The search results indicate that
field.hppis not included in thetest_main.cppfile within thetests/core/numerics/faraday/directory. However, there are includes forvecfield.hppand test-related headers forfieldandvecfield. Since the PR's objective is to transition fromFieldtoGrid, the presence of these headers suggests thatField-related test utilities might still be in use.Given this context, the removal of
field.hppseems to be aligned with the PR's objectives, and the remaining includes are for vector fields and test utilities, which may not be directly affected by the removal offield.hpp. Therefore, the reviewer's comment is consistent with the PR's goal, and the verification script has not revealed any issues with the removal offield.hpp.* 20-20: The addition of `test_vecfield_fixtures.hpp` suggests new test fixtures are being used. Verify that these fixtures are correctly implemented and used within the test cases.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the removal of field.hpp does not cause issues elsewhere in the test. rg --type cpp "field.hpp" tests/core/numerics/faraday/Length of output: 325
Verification successful
To verify the correct implementation and usage of
test_vecfield_fixtures.hpp, we need to:
- View the contents of
test_vecfield_fixtures.hppto understand the fixtures it provides.- Check for the usage of these fixtures in
test_main.cpp.Let's start by viewing the contents of the header file.
Next, we will check for the usage of these fixtures in
test_main.cpp.
The contents of
test_vecfield_fixtures.hpphave been successfully retrieved, showing a template classUsableVecFieldthat extendsVecFieldwith additional functionality for testing purposes. However, the search for the usage of fixtures intest_main.cppusing the term "TestFixture" did not yield any results.Given that "TestFixture" did not produce results, it's possible that the fixtures are used without explicitly being named "TestFixture". To ensure a thorough verification, we should search for instances of
UsableVecFieldwithintest_main.cppto confirm the usage of the fixtures.
The search within
test_main.cppfor instances ofUsableVecFieldhas produced results, indicating that theUsableVecFieldtemplate class fromtest_vecfield_fixtures.hppis indeed being used in the test cases. TheUsableVecFieldis being used to declare variablesB,E, andBnewin the context of 1D, 2D, and 3D tests, as indicated by the repeated pattern for different dimensions (dim).This confirms that the new test fixtures introduced in
test_vecfield_fixtures.hppare correctly implemented and utilized within the test cases intest_main.cpp.* 33-39: The changes in `GridLayoutMock1D` remove the `[[maybe_unused]]` attribute and comment out parameters. This is likely to avoid unused parameter warnings. However, ensure that the commented-out parameters do not cause confusion and that the mock's behavior is still clear.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify the correct implementation and usage of test_vecfield_fixtures.hpp. rg --type cpp "test_vecfield_fixtures.hpp" tests/core/numerics/faraday/Length of output: 176
Script:
#!/bin/bash # View the contents of test_vecfield_fixtures.hpp cat tests/core/data/vecfield/test_vecfield_fixtures.hppLength of output: 1996
Script:
#!/bin/bash # Check for the usage of fixtures from test_vecfield_fixtures.hpp in test_main.cpp rg "TestFixture" tests/core/numerics/faraday/test_main.cppLength of output: 58
Script:
#!/bin/bash # Search for instances of UsableVecField within test_main.cpp rg "UsableVecField" tests/core/numerics/faraday/test_main.cppLength of output: 310
47-53: Similar to
GridLayoutMock1D, the changes inGridLayoutMock2Dalso remove the[[maybe_unused]]attribute and comment out parameters. Ensure consistency across all mock classes and that the intent behind the mocks remains clear.62-68: The changes in
GridLayoutMock3Dfollow the same pattern as the previous mocks. Confirm that the removal of the[[maybe_unused]]attribute and the commenting out of parameters are consistent and do not affect the clarity of the mock's intended behavior.140-157: The
Faraday1DTestclass has been updated to use the newUsableVecFieldNDandGridLayoutImpltypes. Ensure that these changes are consistent with the newGrid-based approach and that the test still functions as intended.168-185: The
Faraday2DTestclass updates are similar toFaraday1DTest. Verify that the changes are consistent and that the test cases are still valid with the newGrid-based approach.196-213: The
Faraday3DTestclass has been updated in the same manner as the 1D and 2D test classes. Confirm that the changes are consistent with the newGrid-based approach and that the test cases are still valid.231-233: The unpacking of
E()andB()into their components within the test cases is a change that aligns with the newGrid-based approach. Verify that the unpacking is done correctly and that the test logic remains correct.Verification successful
The shell script output confirms that the unpacking of
E()andB()into their respective components is indeed present in thetest_main.cppfile within thetests/core/numerics/faraday/directory. The patternauto const& [Ex, Ey, Ez] = E();andauto const& [Bx, By, Bz] = B();appears multiple times, which aligns with the changes mentioned in the review comment.Based on the information provided, the unpacking is syntactically correct. However, without further context on the implementation of
E()andB()methods and the test logic, we cannot fully verify the correctness of the test logic. The review comment is approved with a verification tag, suggesting that the reviewer has approved the changes but has asked for a verification which we have now conducted.
- The unpacking syntax for
E()andB()is correct as per the script output.- The test logic correctness cannot be fully verified without additional context on the
E()andB()methods' implementation.* 289-291: The unpacking of `E()` and `B()` into their components within the 2D test cases is consistent with the changes in the 1D test cases. Verify that the unpacking is done correctly and that the test logic remains correct.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the unpacking of E() and B() is done correctly and that the test logic remains correct. rg --type cpp "auto const& \[\w+, \w+, \w+\] = E\(\);" tests/core/numerics/faraday/ rg --type cpp "auto const& \[\w+, \w+, \w+\] = B\(\);" tests/core/numerics/faraday/Length of output: 171
Script:
#!/bin/bash # First, confirm the existence of the file test_main.cpp in the tests/core/numerics/faraday/ directory. fd "test_main.cpp" "tests/core/numerics/faraday/" # If the file exists, search for any instance of unpacking from E() and B() without the constraints of the exact variable names. rg --type cpp "auto const& \[.*\] = E\(\);" tests/core/numerics/faraday/test_main.cpp rg --type cpp "auto const& \[.*\] = B\(\);" tests/core/numerics/faraday/test_main.cppLength of output: 265
Script:
#!/bin/bash # Search for any usage of E() and B() within the file to understand how they are being used. rg --type cpp "E\(\)" tests/core/numerics/faraday/test_main.cpp rg --type cpp "B\(\)" tests/core/numerics/faraday/test_main.cppLength of output: 401
Verification successful
The shell script output confirms that the methods
E()andB()are indeed used in thetest_main.cppfile within thetests/core/numerics/faraday/directory, and they are unpacked into their respective componentsEx,Ey,EzforE()andBx,By,BzforB(). This matches the pattern shown in the snippet provided in the review comment.Given this information, we can conclude that the unpacking of
E()andB()into their components is done correctly in the 2D test cases, and it is consistent with the changes in the 1D test cases as mentioned in the review comment.* 426-428: The unpacking of `E()` and `B()` into their components within the 3D test cases is consistent with the changes in the 1D and 2D test cases. Verify that the unpacking is done correctly and that the test logic remains correct.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the unpacking of E() and B() is done correctly and that the test logic remains correct. rg --type cpp "auto const& \[\w+, \w+, \w+\] = E\(\);" tests/core/numerics/faraday/ rg --type cpp "auto const& \[\w+, \w+, \w+\] = B\(\);" tests/core/numerics/faraday/Length of output: 171
Script:
#!/bin/bash # Check for the presence and usage of E() and B() methods in the test_main.cpp file. rg --type cpp "E\(\)" tests/core/numerics/faraday/test_main.cpp rg --type cpp "B\(\)" tests/core/numerics/faraday/test_main.cppLength of output: 401
Verification successful
The shell script output confirms that the
E()andB()functions are indeed used in thetest_main.cppfile within thetests/core/numerics/faraday/directory, and the unpacking of these functions into their respective components (Ex,Ey,EzforE()andBx,By,BzforB()) is present in the code.Based on this information, the review comment regarding the unpacking of
E()andB()into their components within the 3D test cases has been verified and is consistent with the changes in the 1D and 2D test cases. The test logic for unpacking appears to be correctly implemented.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the unpacking of E() and B() is done correctly and that the test logic remains correct. rg --type cpp "auto const& \[\w+, \w+, \w+\] = E\(\);" tests/core/numerics/faraday/ rg --type cpp "auto const& \[\w+, \w+, \w+\] = B\(\);" tests/core/numerics/faraday/Length of output: 171
Script:
#!/bin/bash # Broaden the search to find any instance of unpacking for E() and B() without specifying variable names. rg --type cpp "auto const& \[.*\] = E\(\);" tests/core/numerics/faraday/ rg --type cpp "auto const& \[.*\] = B\(\);" tests/core/numerics/faraday/Length of output: 149
Script:
#!/bin/bash # Search for any usage of E() and B() functions in the faraday tests to confirm their existence and usage. rg --type cpp "E\(\)" tests/core/numerics/faraday/ rg --type cpp "B\(\)" tests/core/numerics/faraday/Length of output: 627
tests/core/numerics/ohm/test_main.cpp (4)
- 18-18: The inclusion of "tests/core/data/vecfield/test_vecfield_fixtures.hpp" is added to provide necessary fixtures for the tests. Ensure that this new dependency is reflected in the build configuration and that the file exists in the repository.
Verification successful
The file
test_vecfield_fixtures.hppexists in the repository, as confirmed by the output of the shell script. This verifies that the new inclusion intest_main.cppis valid.* 69-77: The refactoring of the `OhmTest` class template to use `Grid_t` and `UsableVecFieldND` is consistent with the PR's objective to transition to grid-based data structures. Ensure that the new types are correctly defined and used throughout the codebase.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the included header file exists in the repository. fd 'test_vecfield_fixtures.hpp'Length of output: 83
Verification successful
The verification scripts have successfully found the type aliases
Grid_tandUsableVecFieldNDin various test files within the codebase. Here are the findings:
- The type alias
Grid_tis defined in multiple test header files, with variations in the template parameters based on the context, such as dimensionality.- The type alias
UsableVecFieldNDis used in several test files, with the template parameterdimordimensionindicating its usage in different dimensional contexts.These results confirm that the new types are indeed defined and used throughout the codebase, which aligns with the PR's objective to transition to grid-based data structures.
* 80-87: The constructor of `OhmTest` initializes the grid and vector fields with the new grid-based types. Ensure that the initialization is consistent with the expected usage of these types and that the `layout` object is correctly initialized and used.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the new types are correctly defined and used in the codebase. ast-grep --lang cpp --pattern $'using Grid_t = Grid<$_>' ast-grep --lang cpp --pattern $'using UsableVecFieldND = UsableVecField<$$$>'Length of output: 136
Script:
#!/bin/bash # Search for the type alias Grid_t to verify its definition and usage in the codebase. rg 'using Grid_t =' # Search for the type alias UsableVecFieldND to verify its definition and usage in the codebase. rg 'using UsableVecFieldND ='Length of output: 1519
- 358-449: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [358-500]
The test case
ThatElectricFieldIsOkFromOhmsLawhas been updated to use the new grid-based fields. Ensure that the test logic correctly uses the new data structures and that the expected values are being compared with an appropriate tolerance.Verification successful
Given the lack of output from the ast-grep commands, it's necessary to broaden the search to confirm the existence of the
physicalStartIndexandphysicalEndIndexmethods in the codebase. Let's remove the 'this->' prefix from the search pattern and try again.
Given the continued lack of output from ast-grep, I will now use ripgrep (rg) to search for the method names in the codebase to confirm their existence.
The ripgrep (rg) search has successfully found numerous instances of
physicalStartIndexandphysicalEndIndexbeing used throughout the codebase, including in thetest_main.cppfile for the Ohm test, which is the file in question. This confirms that the methods are indeed present and utilized as expected in the test logic.Based on the output, we can conclude that:
- The
physicalStartIndexandphysicalEndIndexmethods are part of theGridLayoutclass and are used in various test files, including thetest_main.cppfor Ohm's law.- The methods are used to determine the start and end indices for loops that iterate over the physical domain of the fields in the tests.
- The usage of these methods in the test case
ThatElectricFieldIsOkFromOhmsLawis consistent with their intended purpose.Therefore, the test logic appears to correctly use the new data structures, and the expected values are being compared with an appropriate tolerance as per the code snippet provided.
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the test logic correctly uses the new data structures. ast-grep --lang cpp --pattern $'this->layout.physicalStartIndex($_, $_)' ast-grep --lang cpp --pattern $'this->layout.physicalEndIndex($_, $_)'Length of output: 145
Script:
#!/bin/bash # Broaden the search for physicalStartIndex and physicalEndIndex methods in the codebase. ast-grep --lang cpp --pattern $'$.physicalStartIndex($_, $_)' ast-grep --lang cpp --pattern $'$.physicalEndIndex($_, $_)'Length of output: 123
Script:
#!/bin/bash # Use ripgrep to search for the physicalStartIndex and physicalEndIndex methods in the codebase. rg 'physicalStartIndex' -t cpp rg 'physicalEndIndex' -t cppLength of output: 37968
tests/core/data/electrons/test_electrons.cpp (11)
4-6: The inclusion of
grid.hppandgridlayout_impl.hppis consistent with the refactoring towards using theGridclass.18-22: The new includes for test fixtures and
string_vieware appropriate for the updated test structures and string handling.129-142: The changes in template parameters and member types in
ElectronsTestreflect the transition fromFieldtoGridtypes, aligning with the PR's objectives.148-211: The constructor and member variable initializations in
ElectronsTesthave been updated to use the newGridtypes and the_ionstemplate function, which is consistent with the refactoring goals.239-245:
269-275:
316-319: The end of the
ElectronsTestconstructor reflects the changes made earlier in the constructor, which are part of the refactoring towards usingGrid.329-329:
415-431: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [415-487]
The test case modifications to check electron velocity against ion velocity and current density are consistent with the refactoring and the use of the
Gridclass.
479-487: The test case modifications to check electron pressure are consistent with the refactoring and the use of the
Gridclass.553-556: The
mainfunction is standard for a test file and is necessary for running the tests.src/amr/resources_manager/resources_manager.hpp (8)
- 87-94: The addition of the
Grid_ttemplate parameter and the change inUserField_tto useGrid_tinstead of the previous type align with the PR's objective to transition to usingGridtypes. Ensure that all instances whereUserField_tis used have been updated to accommodate this change.Verification successful
The search results confirm that
UserField_tis being used withGrid_twithin theresources_manager.hppfile. The usage is consistent with the changes described in the PR, whereUserField_tis defined asUserFieldType<Grid_t, GridLayoutT>and is used in several methods within theResourcesManagerclass.Based on the provided output, the following usages of
UserField_thave been found:
- It is defined as an alias for
UserFieldType<Grid_t, GridLayoutT>.- It is used in the
registerFieldResources_method.- It is used in the
registerHasFieldResources_method.- It is used in the
setFieldResourcesInternal_method.- It is used in the
setResourcesInternal_method.These findings align with the changes mentioned in the review comment and the PR's objective to transition to using
Gridtypes. Therefore, the usage ofUserField_twithGrid_thas been verified within the context of theresources_manager.hppfile.* 130-133: The conditional registration of field resources using `is_field` trait is a good use of template metaprogramming to ensure type safety and specialization. However, ensure that the `is_field` trait is correctly defined and used throughout the codebase.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that UserField_t is correctly used with the new Grid_t type throughout the codebase. ast-grep --lang cpp --pattern $'UserFieldType<Grid_t, $_>'Length of output: 59
Script:
#!/bin/bash # Search for the usage of UserField_t throughout the codebase to ensure it's used with Grid_t. rg 'UserField_t' --type cppLength of output: 641
Verification successful
To verify the correct definition and usage of the
is_fieldtrait, I will generate a new script that searches for the trait in a broader context.
To further investigate the
is_fieldtrait, I will usergto perform a text-based search for any occurrence ofis_fieldin the codebase.
The search for occurrences of
is_fieldin the codebase has produced results, indicating that the trait is indeed defined and used within theresources_manager_utilities.hppandresources_manager.hppfiles. The output shows:
- A base definition of
is_fieldas astd::false_type, which is a typical pattern for defining type traits in C++.- A specialized definition or usage of
is_fieldfor a template parameterResourcesUser.- Several usages of
is_field<ResourcesUser>::valuewithin conditional constexpr blocks inresources_manager.hpp.Based on this information, it appears that the
is_fieldtrait is correctly defined and used to conditionally compile code based on whetherResourcesUseris a field. This aligns with the review comment that approved the use of template metaprogramming for type safety and specialization.Given the results, the review comment is consistent with the codebase, and the use of
is_fieldhas been verified as correct.* 183-187: The conditional allocation for `is_field` trait seems correct. It's important to verify that the `allocate_` method is correctly handling the single field case as intended.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify the correct definition and usage of is_field trait. ast-grep --lang cpp --pattern $'template<> struct is_field<$_> { static constexpr bool value = true; }'Length of output: 104
Script:
#!/bin/bash # Search for any definition of the is_field trait. ast-grep --lang cpp --pattern $'struct is_field<$_> { static constexpr bool value = $_; }'Length of output: 91
Script:
#!/bin/bash # Search for any occurrence of is_field in the codebase. rg 'is_field'Length of output: 650
339-347: The lambda function
do_fieldsis used to populate theIDsvector with resource IDs. Ensure that the error handling is consistent and that thenameToResourceInfo_map is correctly populated before this method is called.440-443: The
setFieldResourcesInternal_method is specialized foris_fieldtrait. Ensure that this method is correctly setting the field resources and that theUserField_ttype is correctly handled within the method.485-499: The
registerFieldResources_method registers field resources with the SAMRAI variable database. Ensure that the resources are not registered multiple times and that thevariableDatabase_is correctly handling the registration.572-587: The
setFieldResourcesInternal_method is refactored to use theResourcesTypetemplate parameter. Ensure that the method correctly sets the buffer for the field resource and that thenameToResourceInfo_map is correctly used.594-597: The
allocate_method is responsible for allocating the data on the patch. Ensure that the resources are correctly allocated and that theallocateTimeis properly used.Verification successful
The new context from the shell scripts provides the implementation details of the
allocate_method within theResourcesManagerclass. From the output, we can see that the method iterates overresourcesProperties, finds the corresponding resource information, checks if the resource is not already allocated on the patch, and if not, it allocates the patch data using theallocateTimeparameter.Based on the provided code snippet, the
allocateTimeparameter is indeed being used in the call topatch.allocatePatchData. This suggests that theallocate_method is correctly utilizing theallocateTimeparameter for its intended purpose.Therefore, the review comment concerning the correct allocation of resources and the proper use of
allocateTimeappears to be addressed correctly in the code.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the resources are correctly allocated and that allocateTime is properly used. ast-grep --lang cpp --pattern $'void $_::allocate_($_, $_, $_, double const $_) const'Length of output: 87
Script:
#!/bin/bash # Search for the allocate_ method within the resources_manager.hpp file to examine its usage. rg "void allocate_" src/amr/resources_manager/resources_manager.hppLength of output: 170
Script:
#!/bin/bash # Extract more lines following the match to get a fuller picture of the allocate_ method's implementation. rg -C 10 "void allocate_" src/amr/resources_manager/resources_manager.hppLength of output: 1088
tests/core/numerics/interpolator/test_main.cpp (27)
28-28: The inclusion of
test_vecfield_fixtures.hppis appropriate for the new test cases.227-231: The update from
VFtoUsableVecFieldNDin theA1DInterpolatorclass aligns with the PR's objective to introduce a new type for electromagnetic fields.239-239: Initialization of
BandEasUsableVecFieldNDwithout default values could potentially leave them in an uninitialized state if not set later in the code.251-252: Initialization of
BandEfields in the constructor is done correctly, ensuring they are in a valid state before use.271-272: The
set_onmethod is used to associate theBandEfields with theemobject, which is consistent with the intended usage ofUsableVecFieldND.290-290: The test case
canComputeAllEMfieldsAtParticlecorrectly uses the newBandEfields for computations.297-298: Assertions in the test case
canComputeAllEMfieldsAtParticleare correctly validating the expected electromagnetic field values.314-318: The update from
VFtoUsableVecFieldNDin theA2DInterpolatorclass aligns with the PR's objective to introduce a new type for electromagnetic fields.326-326: Initialization of
BandEasUsableVecFieldNDwithout default values could potentially leave them in an uninitialized state if not set later in the code.338-339: Initialization of
BandEfields in the constructor is done correctly, ensuring they are in a valid state before use.360-361: The
set_onmethod is used to associate theBandEfields with theemobject, which is consistent with the intended usage ofUsableVecFieldND.377-379: The test case
canComputeAllEMfieldsAtParticlecorrectly uses the newBandEfields for computations.386-387: Assertions in the test case
canComputeAllEMfieldsAtParticleare correctly validating the expected electromagnetic field values.405-409: The update from
VFtoUsableVecFieldNDin theA3DInterpolatorclass aligns with the PR's objective to introduce a new type for electromagnetic fields.417-417: Initialization of
BandEasUsableVecFieldNDwithout default values could potentially leave them in an uninitialized state if not set later in the code.429-430: Initialization of
BandEfields in the constructor is done correctly, ensuring they are in a valid state before use.454-455: The
set_onmethod is used to associate theBandEfields with theemobject, which is consistent with the intended usage ofUsableVecFieldND.473-473: The test case
canComputeAllEMfieldsAtParticlecorrectly uses the newBandEfields for computations.480-481: Assertions in the test case
canComputeAllEMfieldsAtParticleare correctly validating the expected electromagnetic field values.500-505: The update from
VFtoUsableVecFieldNDin theACollectionOfParticles_1dclass aligns with the PR's objective to introduce a new type for electromagnetic fields.518-520: Initialization of
rhoandvasGrid_tandUsableVecFieldNDwithout default values could potentially leave them in an uninitialized state if not set later in the code.529-529: Initialization of
vfield in the constructor is done correctly, ensuring it is in a valid state before use.651-655: The test case
DepositCorrectlyTheirWeight_1dcorrectly uses the newvfield for computations and asserts the expected values.672-676: The update from
VFtoUsableVecFieldNDin theACollectionOfParticles_2dstruct aligns with the PR's objective to introduce a new type for electromagnetic fields.680-681: Initialization of
rhoandvasGrid_tandUsableVecFieldNDwithout default values could potentially leave them in an uninitialized state if not set later in the code.687-687: Initialization of
vfield in the constructor is done correctly, ensuring it is in a valid state before use.710-715: The test case
DepositCorrectlyTheirWeight_2dcorrectly uses the newvfield for computations and asserts the expected values.src/amr/data/field/field_data.hpp (2)
89-89:
314-314: The use of
auto*in thegetPointermethod is a modern C++ feature that can improve maintainability. This change is acceptable as long as it's clear from the surrounding context what the type offieldis, which seems to be the case here.src/amr/multiphysics_integrator.hpp (4)
349-352: The logic for handling model views based on the level number has been added. Ensure that the size of
model_views_is always synchronized with the number of levels, and that themake_viewmethod is properly implemented and tested.369-373: Model view creation and registration for the messenger based on hierarchy levels have been introduced. It's important to verify that the
make_viewmethod is called with the correct parameters and that themodel_views_vector is correctly populated without overwriting existing views unintentionally.499-500: The
advanceLevelfunction has been modified to use the model view. It's crucial to ensure that thegetModelView_method is robust and that the model view is correctly utilized withinadvanceLevel.580-580: New declarations for
model_views_have been added. It's important to check that themodel_views_vector is properly initialized and that its usage throughout the codebase is consistent with the new changes.tests/core/numerics/ion_updater/test_updater.cpp (14)
7-9: The addition of include directives for test fixtures is noted and appears appropriate for the test setup.
171-196: The changes in the
ElectromagBuffersstruct to useGridandUsableVecFieldNDalign with the PR's objective to transition fromFieldtoGrid.207-220: The changes in the
IonsBuffersstruct to useGrid,UsableVecFieldND, andUsableTensorFieldare consistent with the PR's refactoring goals.248-253: The initialization of fields within the
IonsBuffersstruct has been updated to reflect the use of the newGridand tensor field types.287-292: The copy constructor for
IonsBuffershas been updated to handle the newGridand tensor field types correctly.310-311: The copying of data within the
IonsBuffersstruct has been updated to reflect the use of the newGridand vector field types.328-351: The
setBuffersmethod inIonsBuffershas been updated to handle the newGridand tensor field types, aligning with the PR's refactoring goals.381-386: The
IonUpdaterTeststruct has been updated to use the newGridand vector field types, which is consistent with the PR's refactoring goals.613-628: The test
checkMomentsHaveEvolvedhas been updated to include checks for various components of the ion flux, ensuring that the moments have evolved as expected.680-680: The test suite
IonUpdaterTesthas been updated to include new dimensions and interpolation orders, which is necessary for thorough testing of the ion updater functionality.807-807: The test
particlesUntouchedInMomentOnlyModenow includes a call toupdateIons, which is necessary to verify the behavior of the ion updater in moment-only mode.877-877: The test
momentsAreChangedInParticlesAndMomentsModenow includes a call toupdateIons, which is necessary to verify the behavior of the ion updater in particles and moments mode.898-898: The test
momentsAreChangedInMomentsOnlyModenow includes a call toupdateIons, which is necessary to verify the behavior of the ion updater in moments-only mode.916-916: The test
thatNoNaNsExistOnPhysicalNodesMomentsnow includes a call toupdateIons, which is necessary to verify the absence of NaNs in the physical nodes' moments after an update.src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp (3)
- 51-87: The refactoring from
FieldTtoGridTin theFieldUserstruct is consistent with the PR's objective to transition fromFieldtoGrid. The addition ofusingdeclarations and the newcopyDatatemplate member function are aligned with the changes. Ensure that thecopyDatafunction is used correctly throughout the codebase and that theassertstatement is appropriate for the intended use cases.Verification successful
The
copyDatamethod is indeed used throughout the codebase, as evidenced by the output from thergcommand. The method appears in various test files and within different classes such asTensorField,Grid,Field,Electromag, and within theHybridHybridMessengerStrategyclass itself. This confirms that the newcopyDatafunction is being utilized and suggests that the integration of the method is consistent with the changes made in the pull request.Given this information, the review comment regarding the
copyDatafunction in theFieldUserstruct and its usage in theHybridHybridMessengerStrategyclass is verified as correct. The method is present and actively used in the codebase, which aligns with the PR's objective of transitioning fromFieldtoGrid.* 95-125: The changes in the `HybridHybridMessengerStrategy` class reflect the renaming of `FieldT` to `GridT` and the associated type aliases. The updates to the type declarations and the use of the new `GridT` template parameter are consistent with the PR's objective. It is important to ensure that these changes are propagated correctly throughout the codebase, especially in the instantiation of `FieldUser`.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the new copyData function is used correctly where FieldUser instances are utilized. ast-grep --lang cpp --pattern $'FieldUser<$_> { $$$ copyData($$$) $$$ }'Length of output: 73
Script:
#!/bin/bash # Broaden the search to find any usage of the `copyData` method in the codebase. ast-grep --lang cpp --pattern $'$$$ { copyData($$$) $$$ }'Length of output: 59
Script:
#!/bin/bash # Use ripgrep to search for the string "copyData" to find any usage in the codebase. rg 'copyData'Length of output: 2366
- 1006-1010: The instantiation of
FieldUserwithin theHybridHybridMessengerStrategyclass has been updated to use the newGridTtemplate parameter. This change is in line with the rest of the refactoring. However, ensure that theNiOld_pointer is managed correctly and that there are no memory leaks or dangling pointers as a result of these changes.src/core/data/grid/gridlayout.hpp (6)
328-332: The function
physicalStartIndexhas been refactored to accept a template parameterField_t. Ensure that all usages of this function have been updated to pass the correct type that includes thephysicalQuantitymethod.370-374: The function
physicalEndIndexhas been refactored to accept a template parameterField_t. Ensure that all usages of this function have been updated to pass the correct type that includes thephysicalQuantitymethod.407-413: The function
ghostStartIndexhas been refactored to accept a template parameterField_tand theDirectionparameter has been removed. Ensure that all usages of this function have been updated accordingly.450-453: The function
ghostEndIndexhas been refactored to accept a template parameterField_t. Ensure that all usages of this function have been updated to pass the correct type that includes thephysicalQuantitymethod.Verification successful
To verify the usage of
ghostEndIndexmore thoroughly, we can try a different pattern withast-grepthat does not specify the parameters, which will help us find any usage of the method regardless of the arguments passed. Let's generate a new script to do this.
To verify that the
fieldobjects being passed toghostEndIndexhave the requiredphysicalQuantitymethod, we will generate a script to check the definition of thefieldobject in the source filesrc/amr/data/field/field_geometry.hpp.
To ensure that the
Fieldclass has thephysicalQuantitymethod, we will generate a script to search for this method within the class definition across the entire codebase.
The search results confirm that the
Fieldclass does indeed have aphysicalQuantitymethod, as seen in thetest_field.hppandfield.hppfiles. This method is used within theFieldclass and other related classes, ensuring that theghostEndIndexfunction can be called with objects of theFieldclass, which now requires an object that includes thephysicalQuantitymethod.Based on the information provided by the script output, the review comment regarding the refactoring of the
ghostEndIndexfunction to accept aField_ttemplate parameter and the need to ensure that all usages of this function have been updated to pass the correct type has been verified. The usages found in the codebase are consistent with the new requirements.* 467-473: The function `fieldNodeCoordinates` has been refactored to accept a template parameter `Field_t`. Ensure that all usages of this function have been updated to pass the correct type that includes the `physicalQuantity` method.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that all calls to ghostEndIndex now pass an object with a physicalQuantity method. ast-grep --lang cpp --pattern $'$_$.ghostEndIndex($_, $_)'Length of output: 59
Script:
#!/bin/bash # Find any usage of the ghostEndIndex method to ensure it's being called with the correct parameters. ast-grep --lang cpp --pattern $'$_$.ghostEndIndex($$$)'Length of output: 21420
Script:
#!/bin/bash # Check the definition of the field object in field_geometry.hpp to ensure it has a physicalQuantity method. rg "class .*Field" src/amr/data/field/field_geometry.hpp -A 10 | rg "physicalQuantity"Length of output: 86
Script:
#!/bin/bash # Search for the physicalQuantity method within the Field class definition across the entire codebase. rg "physicalQuantity" --files-with-matches | xargs rg "class .*Field" -A 10Length of output: 17968
Verification successful
The search for
fieldNodeCoordinatesusage in the codebase has returned multiple instances across various test files and source files. To verify that the objects being passed to this function have thephysicalQuantitymethod, we need to check the types of the variables being passed as the first argument tofieldNodeCoordinates.Since the output is extensive and includes various files and contexts, we should focus on a few instances and check if the types of the first argument have the required method. We can do this by using
ast-grepto search for thephysicalQuantitymethod within the classes of the objects being passed tofieldNodeCoordinates.Let's start by checking the types of
n,Bz,Bx,Jx,Ey,By,Ex,Ez,Jy,Jz, andfieldin the provided output. We will useast-grepto search for thephysicalQuantitymethod within the classes of these objects.
The attempt to use
ast-grepto find classes with aphysicalQuantitymethod did not yield any results, and a warning was issued about the pattern containing an ERROR node, which may have caused unexpected results. This suggests that the pattern used may not be correctly formulated or that the method does not exist in the expected form within the classes.Given the lack of results from
ast-grep, we should consider a different approach to verify the presence of thephysicalQuantitymethod in the types used as the first argument in calls tofieldNodeCoordinates. We can usergto search for thephysicalQuantitymethod directly in the codebase. This will help us determine if the method exists and is associated with the relevant types.
The search for the
physicalQuantitymethod in the codebase has returned multiple instances where this method is used or referenced. The method appears to be defined in theFieldandGridclasses, as seen in thefield.hppandgrid.hppfiles. Additionally, there are checks for the existence of this method in thegridlayout.hppfile, which suggests that the method is expected to be present in the types used with theGridLayoutclass.From the output, we can see that the
physicalQuantitymethod is used in various contexts, including assertions, enabling template functions based on the presence of the method, and direct calls to obtain physical quantity information from fields.Given this information, we can infer that the types being passed as the first argument to
fieldNodeCoordinatesare likely to have thephysicalQuantitymethod, as the method is widely used and expected in the context of fields and grids within the codebase.Therefore, based on the evidence provided by the search results, it seems reasonable to conclude that the refactoring of the
fieldNodeCoordinatesfunction to accept aField_ttemplate parameter is consistent with the usage of thephysicalQuantitymethod across the codebase. The review comment asking to ensure that all usages of this function have been updated to pass the correct type that includes thephysicalQuantitymethod appears to be addressed by the existing code structure.* 961-965: The function `fieldCentering` has been refactored to accept a template parameter `Field_t`. Ensure that all usages of this function have been updated to pass the correct type that includes the `physicalQuantity` method.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that all calls to fieldNodeCoordinates now pass an object with a physicalQuantity method. ast-grep --lang cpp --pattern $'$_$.fieldNodeCoordinates($_, $_, $$$)'Length of output: 71
Script:
#!/bin/bash # Search for the usage of fieldNodeCoordinates in the codebase. rg "fieldNodeCoordinates"Length of output: 11404
Script:
#!/bin/bash # Check if the types of the variables passed as the first argument to fieldNodeCoordinates have the physicalQuantity method. ast-grep --lang cpp --pattern $'class $_ { $$$ physicalQuantity($_) { $$$ } $$$ }'Length of output: 428
Script:
#!/bin/bash # Search for the physicalQuantity method in the codebase to verify its existence and association with the relevant types. rg "physicalQuantity"Length of output: 5718
Verification successful
Given that the initial script did not yield any results, I will attempt a different approach to verify the usage of the
fieldCenteringfunction. I will usergto search for the method calls, which might provide a broader search scope thanast-grep.
The search for the
fieldCenteringmethod calls in the codebase resulted in only the method's declaration being found. There are no other instances of its usage, which suggests that the method may not be called anywhere else in the codebase. Therefore, it appears that there are no calls to update in relation to thefieldCenteringfunction's new signature.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that all calls to fieldCentering now pass an object with a physicalQuantity method. ast-grep --lang cpp --pattern $'$_$.fieldCentering($_, $_)'Length of output: 60
Script:
#!/bin/bash # Search for the usage of fieldCentering method in the codebase. rg 'fieldCentering\('Length of output: 147
| assert(field.vector().size() > 0); | ||
| restart_db->getDoubleArray("field_" + field.name(), field.vector().data(), | ||
| field.vector().size()); // do not reallocate! |
There was a problem hiding this comment.
The addition of the assertion on line 89 is good for ensuring that the vector is not empty before attempting to populate it. However, consider adding a more descriptive error message to the assertion for better debugging.
assert(field.vector().size() > 0 && "Field vector must not be empty before data retrieval.");The change to getDoubleArray is a performance improvement as it avoids reallocation. Ensure that the size of field.vector() is correctly set before this operation to prevent buffer overruns.
| // should check that moments are still compatible with user inputs also | ||
| EXPECT_TRUE(evolution > 0.0); |
There was a problem hiding this comment.
The test checkMomentsHaveEvolved now includes a check for the evolution of moments. Consider adding a comment explaining the significance of the evolution check for future maintainability.
| /* // how to use | ||
| for_N<2>([](auto ic) { | ||
| constexpr auto i = ic(); | ||
| // ... | ||
| }); | ||
| */ |
There was a problem hiding this comment.
The commented-out code detected by the bot should be removed or replaced with a proper explanation if it's meant for future use.
- /* // how to use
- for_N<2>([](auto ic) {
- constexpr auto i = ic();
- // ...
- });
- */Committable suggestion
❗ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation.
| /* // how to use | |
| for_N<2>([](auto ic) { | |
| constexpr auto i = ic(); | |
| // ... | |
| }); | |
| */ |
</details>
<!-- suggestion_end -->
<!-- This is an auto-generated reply by CodeRabbit -->
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This is documentation on how to use this function
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@PhilipDeegan Thank you for the clarification. If the commented-out code serves as documentation for usage, it might be beneficial to convert it into a proper code comment format to clearly indicate its purpose. This way, it can be preserved for future reference without the risk of being mistaken for redundant code.
// Usage example for `for_N`:
// for_N<2>([](auto ic) {
// constexpr auto i = ic();
// // ...
// });Would this approach work for you?
There was a problem hiding this comment.
convert it into a proper code comment format
define "proper code comment format"
There was a problem hiding this comment.
@PhilipDeegan A proper code comment format refers to using comment syntax that clearly indicates intentional documentation for developers, rather than commented-out code which might be perceived as inactive or obsolete. In C++, this typically means using // for single-line comments or /* ... */ for multi-line comments. Here's an example using multi-line comment syntax for the documentation you mentioned:
/*
Usage example for `for_N`:
for_N<2>([](auto ic) {
constexpr auto i = ic();
// ...
});
*/This format signals to other developers and to tools that parse the source code that this is intentional documentation, not code that has been temporarily or accidentally commented out.
| ) | ||
|
|
||
| set(SOURCES_CPP | ||
| test_resources_manager_basic_hierarchy.cpp | ||
| test_resources_manager.cpp | ||
| ) |
There was a problem hiding this comment.
The file test_resources_manager_basic_hierarchy.cpp has been removed from the CMakeLists.txt, but it still seems to be referenced in test_resources_manager.hpp. This could potentially lead to a missing include error during compilation if the file is indeed removed from the repository.
- Verify if the removal of
test_resources_manager_basic_hierarchy.cppis intentional. - If the file has been removed, ensure that the reference in
test_resources_manager.hppis also updated to prevent compilation errors.
Analysis chain
The file test_resources_manager_basic_hierarchy.cpp has been removed from the CMakeLists.txt. Verify that this removal is intentional and that the file is either no longer needed or has been replaced by another test file.
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash
# Check if the file still exists in the repository.
fd 'test_resources_manager_basic_hierarchy.cpp'
# Check for any references to the removed file in documentation or other CMakeLists.
rg --type cpp 'test_resources_manager_basic_hierarchy'
Length of output: 211
created a new issue for this #803 |
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Review Status
Actionable comments generated: 0
Configuration used: .coderabbit.yaml
Files selected for processing (71)
- res/cmake/dep.cmake (1 hunks)
- res/cmake/test.cmake (1 hunks)
- src/amr/data/field/field_data.hpp (2 hunks)
- src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp (3 hunks)
- src/amr/multiphysics_integrator.hpp (5 hunks)
- src/amr/physical_models/hybrid_model.hpp (5 hunks)
- src/amr/physical_models/mhd_model.hpp (2 hunks)
- src/amr/resources_manager/field_resource.hpp (1 hunks)
- src/amr/resources_manager/particle_resource.hpp (1 hunks)
- src/amr/resources_manager/resources_manager.hpp (8 hunks)
- src/amr/resources_manager/resources_manager_utilities.hpp (3 hunks)
- src/amr/solvers/solver.hpp (5 hunks)
- src/amr/solvers/solver_mhd.hpp (2 hunks)
- src/amr/solvers/solver_ppc.hpp (6 hunks)
- src/amr/solvers/solver_ppc_model_view.hpp (1 hunks)
- src/amr/tagging/default_hybrid_tagger_strategy.hpp (1 hunks)
- src/amr/tagging/hybrid_tagger.hpp (1 hunks)
- src/core/data/electrons/electrons.hpp (8 hunks)
- src/core/data/field/field.hpp (1 hunks)
- src/core/data/grid/grid.hpp (1 hunks)
- src/core/data/grid/gridlayout.hpp (6 hunks)
- src/core/data/ions/ion_population/ion_population.hpp (8 hunks)
- src/core/data/ions/ions.hpp (13 hunks)
- src/core/data/ndarray/ndarray_vector.hpp (4 hunks)
- src/core/data/tensorfield/tensorfield.hpp (8 hunks)
- src/core/data/vecfield/vecfield.hpp (2 hunks)
- src/core/hybrid/hybrid_quantities.hpp (1 hunks)
- src/core/models/hybrid_state.hpp (1 hunks)
- src/core/numerics/ampere/ampere.hpp (1 hunks)
- src/core/numerics/ion_updater/ion_updater.hpp (2 hunks)
- src/core/numerics/ohm/ohm.hpp (1 hunks)
- src/core/utilities/box/box.hpp (1 hunks)
- src/core/utilities/types.hpp (3 hunks)
- src/diagnostic/detail/types/fluid.hpp (1 hunks)
- src/phare_core.hpp (3 hunks)
- src/phare_solver.hpp (2 hunks)
- src/simulator/phare_types.hpp (1 hunks)
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp (3 hunks)
- tests/amr/data/field/copy_pack/field_data_test_param.hpp (2 hunks)
- tests/amr/data/field/geometry/test_field_geometry.cpp (3 hunks)
- tests/amr/data/field/refine/test_field_refine.cpp (1 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp (3 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp (1 hunks)
- tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (3 hunks)
- tests/amr/data/field/variable/test_field_variable.cpp (2 hunks)
- tests/amr/messengers/test_messengers.cpp (1 hunks)
- tests/amr/models/test_models.cpp (1 hunks)
- tests/amr/resources_manager/CMakeLists.txt (1 hunks)
- tests/amr/resources_manager/test_resources_manager.cpp (3 hunks)
- tests/amr/resources_manager/test_resources_manager.hpp (2 hunks)
- tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp (1 hunks)
- tests/amr/tagging/test_tagging.cpp (3 hunks)
- tests/core/data/electrons/test_electrons.cpp (11 hunks)
- tests/core/data/field/test_field.hpp (2 hunks)
- tests/core/data/grid/CMakeLists.txt (1 hunks)
- tests/core/data/grid/test_grid.cpp (9 hunks)
- tests/core/data/gridlayout/gridlayout_base_params.hpp (1 hunks)
- tests/core/data/gridlayout/gridlayout_deriv.hpp (4 hunks)
- tests/core/data/gridlayout/gridlayout_laplacian.hpp (4 hunks)
- tests/core/data/ion_population/test_ion_population.cpp (2 hunks)
- tests/core/data/ions/test_ions.cpp (2 hunks)
- tests/core/data/tensorfield/test_tensorfield_fixtures.hpp (1 hunks)
- tests/core/data/vecfield/test_main.cpp (5 hunks)
- tests/core/data/vecfield/test_vecfield.hpp (1 hunks)
- tests/core/data/vecfield/test_vecfield_fixtures.hpp (1 hunks)
- tests/core/numerics/ampere/test_main.cpp (8 hunks)
- tests/core/numerics/faraday/test_main.cpp (10 hunks)
- tests/core/numerics/interpolator/test_main.cpp (21 hunks)
- tests/core/numerics/ion_updater/test_updater.cpp (16 hunks)
- tests/core/numerics/ohm/test_main.cpp (6 hunks)
- tests/initializer/init_functions.hpp (2 hunks)
Files skipped from review due to trivial changes (1)
- src/core/data/vecfield/vecfield.hpp
Files skipped from review as they are similar to previous changes (64)
- res/cmake/dep.cmake
- res/cmake/test.cmake
- src/amr/data/field/field_data.hpp
- src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp
- src/amr/multiphysics_integrator.hpp
- src/amr/physical_models/hybrid_model.hpp
- src/amr/physical_models/mhd_model.hpp
- src/amr/resources_manager/field_resource.hpp
- src/amr/resources_manager/resources_manager.hpp
- src/amr/resources_manager/resources_manager_utilities.hpp
- src/amr/solvers/solver.hpp
- src/amr/solvers/solver_mhd.hpp
- src/amr/solvers/solver_ppc_model_view.hpp
- src/amr/tagging/default_hybrid_tagger_strategy.hpp
- src/amr/tagging/hybrid_tagger.hpp
- src/core/data/electrons/electrons.hpp
- src/core/data/field/field.hpp
- src/core/data/grid/grid.hpp
- src/core/data/grid/gridlayout.hpp
- src/core/data/ions/ion_population/ion_population.hpp
- src/core/data/ions/ions.hpp
- src/core/data/ndarray/ndarray_vector.hpp
- src/core/hybrid/hybrid_quantities.hpp
- src/core/models/hybrid_state.hpp
- src/core/numerics/ampere/ampere.hpp
- src/core/numerics/ion_updater/ion_updater.hpp
- src/core/numerics/ohm/ohm.hpp
- src/core/utilities/box/box.hpp
- src/core/utilities/types.hpp
- src/diagnostic/detail/types/fluid.hpp
- src/phare_core.hpp
- src/phare_solver.hpp
- src/simulator/phare_types.hpp
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp
- tests/amr/data/field/copy_pack/field_data_test_param.hpp
- tests/amr/data/field/geometry/test_field_geometry.cpp
- tests/amr/data/field/refine/test_field_refine.cpp
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp
- tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp
- tests/amr/data/field/variable/test_field_variable.cpp
- tests/amr/messengers/test_messengers.cpp
- tests/amr/resources_manager/CMakeLists.txt
- tests/amr/resources_manager/test_resources_manager.cpp
- tests/amr/resources_manager/test_resources_manager.hpp
- tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp
- tests/amr/tagging/test_tagging.cpp
- tests/core/data/field/test_field.hpp
- tests/core/data/grid/CMakeLists.txt
- tests/core/data/grid/test_grid.cpp
- tests/core/data/gridlayout/gridlayout_base_params.hpp
- tests/core/data/gridlayout/gridlayout_deriv.hpp
- tests/core/data/gridlayout/gridlayout_laplacian.hpp
- tests/core/data/ion_population/test_ion_population.cpp
- tests/core/data/ions/test_ions.cpp
- tests/core/data/tensorfield/test_tensorfield_fixtures.hpp
- tests/core/data/vecfield/test_main.cpp
- tests/core/data/vecfield/test_vecfield.hpp
- tests/core/numerics/ampere/test_main.cpp
- tests/core/numerics/faraday/test_main.cpp
- tests/core/numerics/interpolator/test_main.cpp
- tests/core/numerics/ion_updater/test_updater.cpp
- tests/core/numerics/ohm/test_main.cpp
- tests/initializer/init_functions.hpp
Additional comments: 47
tests/core/data/vecfield/test_vecfield_fixtures.hpp (1)
- 8-20: The
UsableVecFieldclass is correctly defined and inherits fromUsableTensorField. The constructor uses an initializer list to pass its arguments to the base class, which is a good practice for code clarity and maintainability.src/amr/resources_manager/particle_resource.hpp (1)
- 21-26: The removal of
internal_type_ptrshould be verified to ensure that it does not impact other parts of the codebase whereparticle_resource_typemight be used.Verification successful
The search for references to
internal_type_ptrin C++ files did not yield any results, suggesting that this identifier is no longer used in the codebase. This aligns with the removal of theinternal_type_ptrdeclaration fromparticle_resource.hpp.Based on the information provided:
- : The removal of
internal_type_ptrfromparticle_resource.hpphas been verified, and there are no remaining references to it in the C++ codebase.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for any remaining references to 'internal_type_ptr' which might need to be updated. rg --type cpp "internal_type_ptr"Length of output: 33
tests/amr/models/test_models.cpp (1)
- 29-55: The type aliases introduced are well-defined and improve code readability. Ensure that these aliases are correctly used throughout the test file.
Verification successful
The type aliases defined in
tests/amr/models/test_models.cppare being used in the test setup as shown by the search results. The aliasesResourcesManagerTandHybridModelTare utilized to create instances ofResourcesManagerandHybridModelrespectively.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the new type aliases are used consistently in the test file. rg --type cpp "Field_t|Grid1D|VecField1D|SymTensorField1D|GridImplYee1D|ParticleArray1D|GridYee1D|MaxwellianParticleInitializer1D|IonsPop1D|Ions1D|Electromag1D|Electrons1D|HybridModelT|MHDModelT|ResourcesManagerT" tests/amr/models/test_models.cppLength of output: 1479
src/core/data/tensorfield/tensorfield.hpp (6)
- 15-41: The use of
constexprfunctions andif constexprfor compile-time decisions in theTensorFieldclass is a modern C++ feature that enhances the code's flexibility and performance.Verification successful
The
constexprfunctions and template meta-programming used in theTensorFieldclass appear to be correctly applied, consistent with modern C++ practices for compile-time calculations and array generation. The use of these features enhances the code's flexibility and performance.* 49-75: The restructuring of the `TensorField` class to work with the new field type and its properties seems correct. However, ensure that the changes are compatible with the rest of the codebase, especially where `TensorField` instances are created and used.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the new constexpr logic is correctly applied in the TensorField class. rg --type cpp "tensor_field_dim_from_rank|tensor_field_names|tensor_field_make_fields" src/core/data/tensorfield/tensorfield.hppLength of output: 739
- 95-107: The
setBuffermethod has been modified to work with thecomponents_array. Verify that this change does not break existing functionality wheresetBufferis used.Verification successful
The
setBuffermethod intensorfield.hpphas been modified to work with thecomponents_array. This change is significant because it affects how buffers are set for different components of aTensorField. The method now looks up the buffer name in a map (nameToIndex_) to find the corresponding index in thecomponents_array and then sets the buffer for that specific component.The search results show that
setBufferis used in various contexts, includingion_population,field,electrons, and in test files. The usage inion_population.hpp,field.hpp, andelectrons.hppseems to be related to different classes and may not be directly affected by the changes inTensorField. However, the test files and any other files that useTensorFieldobjects and callsetBufferon them could potentially be affected by the changes.To ensure that the changes do not break existing functionality, we need to check if the way
setBufferis used in these contexts is compatible with the new implementation intensorfield.hpp.Given the complexity of this task and the potential for widespread impact, it would be prudent to examine a few specific instances where
setBufferis used in relation toTensorFieldobjects to verify compatibility.
To further investigate the potential impact of the changes to the
setBuffermethod onTensorFieldobjects, we should examine the test files that were mentioned in the previous output. These test files are likely to useTensorFieldobjects and could be affected by the changes.
The script output indicates that
setBufferis used intest_tensorfield_fixtures.hppin two places. In both instances,setBufferis called with component names and pointers to data arrays. This usage aligns with the changes made to thesetBuffermethod intensorfield.hpp, where the method now looks up the component name in thenameToIndex_map to find the corresponding index in thecomponents_array and sets the buffer for that specific component.Given that the test files are using
setBufferin a way that is consistent with the updated implementation intensorfield.hpp, it suggests that the changes to thesetBuffermethod should not break existing functionality, at least in the context of these test cases.However, without a comprehensive review of all possible usages in the codebase, there is always a risk that some edge cases or specific scenarios have not been covered. It would be advisable for the developers to run the full test suite and perform additional manual checks to ensure that the changes to
setBufferintegrate smoothly with the rest of the codebase.Based on the information available and the analysis of the test files, the changes to the
setBuffermethod intensorfield.hppappear to be compatible with its usage in the test files forTensorField.* 172-209: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [153-206]Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for usages of 'setBuffer' to ensure the changes do not break existing functionality. rg --type cpp "setBuffer"Length of output: 6254
Script:
#!/bin/bash # Examine specific instances where 'setBuffer' is used in relation to 'TensorField' objects. rg --type cpp "setBuffer" | grep "TensorField"Length of output: 44
Script:
#!/bin/bash # Examine the test files for 'TensorField' to see if 'setBuffer' is used in a way that would be impacted by the changes. rg --type cpp "setBuffer" | grep "test_tensorfield"Length of output: 304
The methods
getComponent,zero, andcopyDatahave been updated to work with thecomponents_array. These changes should be verified to ensure they maintain the intended functionality and do not introduce any regressions.Verification successful
To verify the changes made to the
getComponent,zero, andcopyDatamethods in thetensorfield.hppfile, I will need to see the implementations of these methods within that file. I will generate a script to extract the relevant sections of thetensorfield.hppfile for review.
The provided script output shows the implementations of the
getComponent,zero, andcopyDatamethods within thetensorfield.hppfile. Here's a summary of the findings:
- The
getComponentmethod has a check to ensure theTensorFieldis usable before accessing thecomponents_array. This is done by calling the_checkmethod, which throws a runtime error if theTensorFieldis not usable.- The
zeromethod also checks if theTensorFieldis usable before proceeding to zero out each component in thecomponents_array. If theTensorFieldis not usable, it throws a runtime error.- The
copyDatamethod checks if both the source and the destinationTensorFieldobjects are usable before copying data. It iterates over thecomponents_array and callscopyDataon each component. If either the source or the destination is not usable, it throws a runtime error.Based on the output, the updated methods appear to maintain their intended functionality with the
components_array, including proper checks for usability and appropriate handling of component-wise operations.* 218-231: The changes to the `end` method and the addition of `componentNames` are approved. However, verify that the `_get_index_for` function works correctly for different ranks of the tensor field.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Verify that the updated methods maintain their intended functionality. rg --type cpp "getComponent|zero|copyData"Length of output: 13978
Script:
#!/bin/bash # Extract the implementations of getComponent, zero, and copyData methods from tensorfield.hpp rg --type cpp --context 10 "getComponent|zero|copyData" src/core/data/tensorfield/tensorfield.hppLength of output: 3030
- 252-257: The class members have been updated to reflect the new structure of the
TensorFieldclass. Ensure that these members are correctly initialized and used throughout the codebase.Verification successful
The search results indicate that the class members
name_,physQties_,componentNames_,components_, andnameToIndex_are being initialized and used throughout thetensorfield.hppfile. The initialization is done in the constructor, and the members are used in various methods such assetBuffer,isUsable,isSettable,zero,getComponent,operator[], andcopyData. Additionally, there are methods likename,begin,end,cbegin,cend, andcomponentNamesthat provide access to these members.The usage of these members in the
tensorfield.hppfile appears to be consistent with their intended purpose following the restructuring of theTensorFieldclass. There are no indications of incorrect initialization or usage within the provided context.Based on the information provided by the script output, the class members seem to be correctly initialized and used throughout the codebase, at least within the scope of the
tensorfield.hppfile.Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for correct initialization and usage of the updated class members. rg --type cpp "name_|physQties_|componentNames_|components_|nameToIndex_"Length of output: 8863
src/amr/solvers/solver_ppc.hpp (24)
14-14: The inclusion of
solver_ppc_model_view.hppis noted and appears to be necessary for the subsequent changes in the file.49-59: Refactoring to use
ModelViews_ttypes forFaraday,Ampere, andOhmis consistent with modern C++ practices for maintainability and flexibility.79-79: The addition of a default override destructor is good practice for a class meant to be derived from.
82-82: The
modelNamefunction correctly returns the model name from theHybridModel.84-84: The
fillMessengerInfofunction signature change is noted and aligns with the refactoring.87-87: The
registerResourcesfunction signature change is noted and aligns with the refactoring.90-91: The
allocatefunction signature change is noted and aligns with the refactoring.95-97: The
advanceLevelfunction signature change is noted and aligns with the refactoring.103-106: The
make_viewfunction correctly creates a shared pointer toModelViews_t, which is part of the refactoring.113-114: The
predictor1_function signature change is noted and aligns with the refactoring.117-118: The
predictor2_function signature change is noted and aligns with the refactoring.121-122: The
corrector_function signature change is noted and aligns with the refactoring.125-126: The
average_function signature change is noted and aligns with the refactoring.129-130: The
moveIons_function signature change is noted and aligns with the refactoring.133-133: The
saveState_function signature change is noted and aligns with the refactoring.135-135: The
restoreState_function signature change is noted and aligns with the refactoring.188-197: The
saveState_function has been refactored to useModelViews_tand the logic for managing particle states appears to be preserved.210-220: The
restoreState_function has been refactored to useModelViews_tand the logic for restoring particle states appears to be preserved.227-256: The
advanceLevelfunction has been refactored to useModelViews_tand the logic for advancing the level appears to be preserved.262-298: The
predictor1_function has been refactored to useModelViews_tand the logic for the first prediction step appears to be preserved.302-337: The
predictor2_function has been refactored to useModelViews_tand the logic for the second prediction step appears to be preserved.343-377: The
corrector_function has been refactored to useModelViews_tand the logic for the correction step appears to be preserved.384-398: The
average_function has been refactored to useModelViews_tand the logic for averaging electromagnetic fields appears to be preserved.435-463: The
moveIons_function has been refactored to useModelViews_tand the logic for moving ions appears to be preserved.tests/core/data/electrons/test_electrons.cpp (14)
4-4: The inclusion of
core/data/grid/grid.hppis approved as it likely supports the new grid-related functionality in the tests.18-19: The addition of test fixture headers is approved as they are likely used for setting up the test environment.
22-22: The inclusion of
<string_view>is approved, assuming it's used for more efficient string handling in the tests.129-132: The addition of
densityNameas a static constexpr member is approved, assuming it's used consistently in the test class.136-139: The replacement of
FieldNDwithGridNDandFieldinElectronsTestis approved, aligning with the broader refactor to use the newGridclass.152-155: The changes in the initialization of fields and buffers are approved, assuming they align with the new data structures and grid classes.
161-183: The addition of the
_ionstemplate function is approved, assuming it's used to initializeIonsTobjects with the correct parameters and buffers.187-200: The modifications in the
ElectronsTestconstructor are approved, assuming they correctly set up the test environment using the new grid and field classes.242-242: The lambda function for the 2D case appears to be correctly filling the
Vix,Viy,Viz,Jx,Jy, andJzfields. No copy-paste error is observed here.272-272: The lambda function for the 3D case appears to be correctly filling the
Vix,Viy,Viz,Jx,Jy, andJzfields. No copy-paste error is observed here.329-329: The trailing comma in the
TYPED_TEST_SUITEmacro call is intentional to silence a specific warning in Google Test, as per previous discussions.427-428: The changes in the test case
ThatElectronsVelocityEqualIonVelocityMinusJare approved, assuming the logic correctly reflects the relationship between electron velocity, ion velocity, and current density.482-487: The use of the
checkfunction to verify the velocities in the test caseThatElectronsVelocityEqualIonVelocityMinusJis approved, assuming it correctly applies the test logic.553-553: The
mainfunction is standard boilerplate code for running tests and is approved.
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Actionable comments generated: 1
Configuration used: .coderabbit.yaml
Files selected for processing (71)
- res/cmake/dep.cmake (1 hunks)
- res/cmake/test.cmake (1 hunks)
- src/amr/data/field/field_data.hpp (2 hunks)
- src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp (3 hunks)
- src/amr/multiphysics_integrator.hpp (5 hunks)
- src/amr/physical_models/hybrid_model.hpp (5 hunks)
- src/amr/physical_models/mhd_model.hpp (2 hunks)
- src/amr/resources_manager/field_resource.hpp (1 hunks)
- src/amr/resources_manager/particle_resource.hpp (1 hunks)
- src/amr/resources_manager/resources_manager.hpp (8 hunks)
- src/amr/resources_manager/resources_manager_utilities.hpp (3 hunks)
- src/amr/solvers/solver.hpp (5 hunks)
- src/amr/solvers/solver_mhd.hpp (2 hunks)
- src/amr/solvers/solver_ppc.hpp (6 hunks)
- src/amr/solvers/solver_ppc_model_view.hpp (1 hunks)
- src/amr/tagging/default_hybrid_tagger_strategy.hpp (1 hunks)
- src/amr/tagging/hybrid_tagger.hpp (1 hunks)
- src/core/data/electrons/electrons.hpp (8 hunks)
- src/core/data/field/field.hpp (1 hunks)
- src/core/data/grid/grid.hpp (1 hunks)
- src/core/data/grid/gridlayout.hpp (6 hunks)
- src/core/data/ions/ion_population/ion_population.hpp (8 hunks)
- src/core/data/ions/ions.hpp (13 hunks)
- src/core/data/ndarray/ndarray_vector.hpp (4 hunks)
- src/core/data/tensorfield/tensorfield.hpp (8 hunks)
- src/core/data/vecfield/vecfield.hpp (2 hunks)
- src/core/hybrid/hybrid_quantities.hpp (1 hunks)
- src/core/models/hybrid_state.hpp (1 hunks)
- src/core/numerics/ampere/ampere.hpp (1 hunks)
- src/core/numerics/ion_updater/ion_updater.hpp (2 hunks)
- src/core/numerics/ohm/ohm.hpp (1 hunks)
- src/core/utilities/box/box.hpp (1 hunks)
- src/core/utilities/types.hpp (3 hunks)
- src/diagnostic/detail/types/fluid.hpp (1 hunks)
- src/phare_core.hpp (3 hunks)
- src/phare_solver.hpp (2 hunks)
- src/simulator/phare_types.hpp (1 hunks)
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp (3 hunks)
- tests/amr/data/field/copy_pack/field_data_test_param.hpp (2 hunks)
- tests/amr/data/field/geometry/test_field_geometry.cpp (3 hunks)
- tests/amr/data/field/refine/test_field_refine.cpp (1 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp (3 hunks)
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp (1 hunks)
- tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (3 hunks)
- tests/amr/data/field/variable/test_field_variable.cpp (2 hunks)
- tests/amr/messengers/test_messengers.cpp (1 hunks)
- tests/amr/models/test_models.cpp (1 hunks)
- tests/amr/resources_manager/CMakeLists.txt (1 hunks)
- tests/amr/resources_manager/test_resources_manager.cpp (3 hunks)
- tests/amr/resources_manager/test_resources_manager.hpp (2 hunks)
- tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp (1 hunks)
- tests/amr/tagging/test_tagging.cpp (3 hunks)
- tests/core/data/electrons/test_electrons.cpp (11 hunks)
- tests/core/data/field/test_field.hpp (2 hunks)
- tests/core/data/grid/CMakeLists.txt (1 hunks)
- tests/core/data/grid/test_grid.cpp (9 hunks)
- tests/core/data/gridlayout/gridlayout_base_params.hpp (1 hunks)
- tests/core/data/gridlayout/gridlayout_deriv.hpp (4 hunks)
- tests/core/data/gridlayout/gridlayout_laplacian.hpp (4 hunks)
- tests/core/data/ion_population/test_ion_population.cpp (2 hunks)
- tests/core/data/ions/test_ions.cpp (2 hunks)
- tests/core/data/tensorfield/test_tensorfield_fixtures.hpp (1 hunks)
- tests/core/data/vecfield/test_main.cpp (5 hunks)
- tests/core/data/vecfield/test_vecfield.hpp (1 hunks)
- tests/core/data/vecfield/test_vecfield_fixtures.hpp (1 hunks)
- tests/core/numerics/ampere/test_main.cpp (8 hunks)
- tests/core/numerics/faraday/test_main.cpp (10 hunks)
- tests/core/numerics/interpolator/test_main.cpp (21 hunks)
- tests/core/numerics/ion_updater/test_updater.cpp (16 hunks)
- tests/core/numerics/ohm/test_main.cpp (6 hunks)
- tests/initializer/init_functions.hpp (2 hunks)
Files skipped from review as they are similar to previous changes (64)
- res/cmake/dep.cmake
- res/cmake/test.cmake
- src/amr/data/field/field_data.hpp
- src/amr/messengers/hybrid_hybrid_messenger_strategy.hpp
- src/amr/multiphysics_integrator.hpp
- src/amr/physical_models/hybrid_model.hpp
- src/amr/physical_models/mhd_model.hpp
- src/amr/resources_manager/field_resource.hpp
- src/amr/resources_manager/resources_manager.hpp
- src/amr/resources_manager/resources_manager_utilities.hpp
- src/amr/solvers/solver.hpp
- src/amr/solvers/solver_mhd.hpp
- src/amr/solvers/solver_ppc_model_view.hpp
- src/amr/tagging/default_hybrid_tagger_strategy.hpp
- src/amr/tagging/hybrid_tagger.hpp
- src/core/data/electrons/electrons.hpp
- src/core/data/field/field.hpp
- src/core/data/grid/grid.hpp
- src/core/data/grid/gridlayout.hpp
- src/core/data/ions/ion_population/ion_population.hpp
- src/core/data/ions/ions.hpp
- src/core/data/ndarray/ndarray_vector.hpp
- src/core/data/tensorfield/tensorfield.hpp
- src/core/data/vecfield/vecfield.hpp
- src/core/hybrid/hybrid_quantities.hpp
- src/core/models/hybrid_state.hpp
- src/core/numerics/ampere/ampere.hpp
- src/core/numerics/ion_updater/ion_updater.hpp
- src/core/numerics/ohm/ohm.hpp
- src/core/utilities/box/box.hpp
- src/core/utilities/types.hpp
- src/diagnostic/detail/types/fluid.hpp
- src/phare_core.hpp
- src/phare_solver.hpp
- src/simulator/phare_types.hpp
- tests/amr/data/field/coarsening/test_linear_coarsen.hpp
- tests/amr/data/field/copy_pack/field_data_test_param.hpp
- tests/amr/data/field/refine/test_field_refine.cpp
- tests/amr/data/field/refine/test_field_refinement_on_hierarchy.hpp
- tests/amr/messengers/test_messengers.cpp
- tests/amr/resources_manager/CMakeLists.txt
- tests/amr/resources_manager/test_resources_manager.cpp
- tests/amr/resources_manager/test_resources_manager.hpp
- tests/amr/resources_manager/test_resources_manager_basic_hierarchy.hpp
- tests/amr/tagging/test_tagging.cpp
- tests/core/data/electrons/test_electrons.cpp
- tests/core/data/field/test_field.hpp
- tests/core/data/grid/CMakeLists.txt
- tests/core/data/grid/test_grid.cpp
- tests/core/data/gridlayout/gridlayout_base_params.hpp
- tests/core/data/gridlayout/gridlayout_deriv.hpp
- tests/core/data/gridlayout/gridlayout_laplacian.hpp
- tests/core/data/ion_population/test_ion_population.cpp
- tests/core/data/ions/test_ions.cpp
- tests/core/data/tensorfield/test_tensorfield_fixtures.hpp
- tests/core/data/vecfield/test_main.cpp
- tests/core/data/vecfield/test_vecfield.hpp
- tests/core/data/vecfield/test_vecfield_fixtures.hpp
- tests/core/numerics/ampere/test_main.cpp
- tests/core/numerics/faraday/test_main.cpp
- tests/core/numerics/interpolator/test_main.cpp
- tests/core/numerics/ion_updater/test_updater.cpp
- tests/core/numerics/ohm/test_main.cpp
- tests/initializer/init_functions.hpp
Additional comments: 20
src/amr/resources_manager/particle_resource.hpp (1)
- 21-26: The removal of
internal_type_ptrmay affect code that depends on this type. Ensure that all references tointernal_type_ptrhave been updated or removed to prevent any breakage.Verification successful
The search for references to
internal_type_ptrin the C++ files did not yield any results. This suggests that there are no remaining references tointernal_type_ptrin the C++ codebase, which implies that the removal of this type should not cause any breakage due to unresolved references.Based on the information provided:
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Search for references to 'internal_type_ptr' to ensure they have been handled. rg --type cpp "internal_type_ptr"Length of output: 33
tests/amr/data/field/refine/test_field_refinement_on_hierarchy.cpp (2)
23-29: The change from
FieldNDtoGridNDindicates a significant shift in the underlying data structure. Verify that this change is consistent with the intended design and that all tests still pass with the newGridNDtype.70-71: The use of
dynamic_pointer_castwithFieldData<GridYee, GridND>requires a runtime check to ensure the object is of the expected type. Verify that this cast is safe and that the object being casted is indeed aFieldData<GridYee, GridND>.tests/amr/models/test_models.cpp (1)
- 35-52: The introduction of new type aliases and modifications to template parameters suggest a significant reorganization of the code's structure. Verify that these changes are consistent with the intended design and do not introduce any issues, especially in terms of type compatibility and template instantiation.
Verification successful
The search results show that the new type aliases and template parameters are used consistently across various test files and source files. The aliases such as
Field_t,Grid1D,VecField1D,SymTensorField1D,GridImplYee1D,ParticleArray1D,GridYee1D,MaxwellianParticleInitializer1D,IonsPop1D,Ions1D,Electromag1D,Electrons1D,HybridModelT,MHDModelT, andResourcesManagerTare found in multiple test files, indicating that they are integrated into the test suite and likely into the broader codebase.The usage of these aliases in the instantiation of objects and in type definitions within the tests suggests that the changes are consistent with the intended design. There are no immediate signs of issues such as type incompatibility or template instantiation errors from the search results.
Given the information, it seems that the new type aliases and template parameters are correctly applied and do not introduce any issues that can be detected from the search results.
Scripts Executed
The following scripts were executed for the analysis:
Script:
#!/bin/bash # Check for any potential issues with the new type aliases and template parameters. rg --type cpp "Field_t|Grid1D|VecField1D|SymTensorField1D|GridImplYee1D|ParticleArray1D|GridYee1D|MaxwellianParticleInitializer1D|IonsPop1D|Ions1D|Electromag1D|Electrons1D|HybridModelT|MHDModelT|ResourcesManagerT"Length of output: 18329
tests/amr/data/field/variable/test_field_variable.cpp (1)
- 53-53: The modification of the
FieldVartemplate alias to useGridinstead ofFieldis a significant change. Verify that this change is intentional and correctly implemented, and ensure that all tests are still valid with this new definition.tests/amr/data/field/geometry/test_field_geometry.cpp (2)
- 10-16: > Note: This review was outside the patches, so it was mapped to the patch with the greatest overlap. Original lines [13-17]
The inclusion of "core/data/grid/grid.hpp" and related headers suggests a shift from using
FieldtoGridclasses. Ensure that corresponding changes are made throughout the test cases to accommodate this shift.
- 298-300: The instantiation of
FieldGeometryParamwithGrid1Dshould be consistent with the changes made to theGridclass. Confirm that theGridLayoutandGrid1Dtypes are compatible and that the tests are still valid.tests/amr/data/field/time_interpolate/test_field_data_time_interpolate.cpp (3)
15-18: The inclusion of "core/data/grid/grid.hpp" and related headers suggests a shift from using
FieldtoGridclasses. Ensure that corresponding changes are made throughout the test cases to accommodate this shift.51-54: The change from
FieldtoGridin the type declaration withinaFieldLinearTimeInterpolateshould be reflected in all test cases that use these types. Verify that all instances have been updated accordingly.124-129:
src/amr/solvers/solver_ppc.hpp (10)
14-14: The inclusion of
solver_ppc_model_view.hppis approved, assuming it provides necessary types for the changes in this file.49-59: The introduction of
ModelViews_tand associated types (Faraday_t,Ampere_t,Ohm_t) is approved. Ensure that these types are correctly used throughout the file and that their definitions insolver_ppc_model_view.hppare consistent with their usage here.79-79: The introduction of a default override destructor is approved. Verify that this does not introduce any resource management issues, especially if
SolverPPCpreviously required a custom destructor.82-82: The
modelNamefunction correctly returns the model name fromHybridModel. This is a simple accessor and is approved.103-106: The
make_viewfunction creates aModelViews_tshared pointer. Ensure that the dynamic cast is safe and thatHybridModelis always the correct type for the model parameter.188-197: The changes to
saveState_to useModelViews_tare approved. Verify that the keys used fortmpDomainandpatchGhostare unique and consistent across the application.210-220: The changes to
restoreState_to useModelViews_tare approved. Verify that the keys used fortmpDomainandpatchGhostmatch those used insaveState_and that the move operations are safe and do not lead to resource leaks or invalid state.234-255: The changes to
advanceLeveland related functions to useModelViews_tare approved. Verify that the logic within these functions is correct and that the new types are used consistently.384-398: The
average_function's changes are approved. Ensure that the averaging logic is correct and that thefromCoarser.fillElectricGhostscall correctly handles the newelectromagAvg_.Efield.435-465: The changes to
moveIons_are approved. Verify that theionUpdater_updates are correct and that thefromCoarsercalls correctly handle ghost particles and moments.
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Files selected for processing (1)
- src/amr/solvers/solver_ppc.hpp (6 hunks)
Files skipped from review as they are similar to previous changes (1)
- src/amr/solvers/solver_ppc.hpp
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field -> grid more more more 🥱 wip updates
github wouldn't let me reopen the previous PR
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