Mpi nightly build trials

pyphare/pyphare/pharein/simulation.py

@@ -498,7 +498,7 @@ def check_diag_options(**kwargs):
                 diag_options["options"]["dir"], "diagnostics"
             )
         valid_modes = ["overwrite"]
-        if "mode" in diag_options["options"]:
+        if "options" in diag_options and "mode" in diag_options["options"]:
             mode = diag_options["options"]["mode"]
             if mode not in valid_modes:
                 raise ValueError(

tests/functional/harris/CMakeLists.txt

@@ -8,10 +8,11 @@ if(NOT ${PHARE_PROJECT_DIR} STREQUAL ${CMAKE_BINARY_DIR})
 endif()
 
 if(HighFive AND testMPI)
+
   ## These test use dump diagnostics so require HighFive!
-  # exec level 11
-  # mpirun -n 10
+
   if(testMPI)
-    phare_mpi_python3_exec(11 10 harris_2d harris_2d.py ${CMAKE_CURRENT_BINARY_DIR})
+    phare_mpi_python3_exec(11 10 harris_2d harris_2d_lb.py ${CMAKE_CURRENT_BINARY_DIR})
   endif(testMPI)
+
 endif()

tests/functional/harris/harris_2d.py

@@ -35,8 +35,6 @@
 
 def config():
     sim = ph.Simulation(
-        smallest_patch_size=15,
-        largest_patch_size=25,
         time_step_nbr=time_step_nbr,
         time_step=time_step,
         # boundary_types="periodic",
@@ -155,13 +153,6 @@ def vthz(x, y):
 
 def main():
     Simulator(config()).run()
-    try:
-        from tools.python3 import plotting as m_plotting
-
-        m_plotting.plot_run_timer_data(diag_outputs, cpp.mpi_rank())
-    except ImportError:
-        print("Phlop not found - install with: `pip install phlop`")
-    cpp.mpi_barrier()
 
 
 if __name__ == "__main__":

tests/functional/harris/harris_2d_lb.py

@@ -10,12 +10,12 @@
 from pyphare.pharesee.run import Run
 from pyphare.simulator.simulator import Simulator, startMPI
 
+
 from tests.simulator import SimulatorTest
-from tools.python3 import plotting as m_plotting
 
 mpl.use("Agg")
 
-SCOPE_TIMING = os.getenv("PHARE_SCOPE_TIMING", "True").lower() in ("true", "1", "t")
+SCOPE_TIMING = os.getenv("PHARE_SCOPE_TIMING", "False").lower() in ("true", "1", "t")
 LOAD_BALANCE = os.getenv("LOAD_BALANCE", "True").lower() in ("true", "1", "t")
 
 cpp = cpp_lib()
@@ -184,6 +184,15 @@ def plot(diag_dir):
         )
 
 
+def plot_runtimer(diag_dir, rank):
+    try:
+        from tools.python3 import plotting as m_plotting
+
+        m_plotting.plot_run_timer_data(diag_dir, cpp.mpi_rank())
+    except ImportError:
+        print("phlop not found - or phare src dir not in pythonpath")
+
+
 class HarrisTest(SimulatorTest):
     def __init__(self, *args, **kwargs):
         super(HarrisTest, self).__init__(*args, **kwargs)
@@ -202,7 +211,7 @@ def test_run(self):
         if cpp.mpi_rank() == 0:
             plot(diag_dir)
         if SCOPE_TIMING:
-            m_plotting.plot_run_timer_data(diag_dir, cpp.mpi_rank())
+            plot_runtimer(diag_dir, cpp.mpi_rank())
         cpp.mpi_barrier()
         return self
 

tests/simulator/CMakeLists.txt

@@ -25,9 +25,12 @@ if(HighFive)
 
     # doesn't make sense in serial
     phare_mpi_python3_exec(9 3 load_balancing test_load_balancing.py ${CMAKE_CURRENT_BINARY_DIR})
-  endif(testMPI)
 
-  phare_python3_exec(11, test_diagnostic_timestamps test_diagnostic_timestamps.py ${CMAKE_CURRENT_BINARY_DIR})
+  else()
+    phare_python3_exec(11 test_diagnostic_timestamps test_diagnostic_timestamps.py ${CMAKE_CURRENT_BINARY_DIR})
+
+  endif(testMPI)
+
 endif()
 
 configure_file(${CMAKE_CURRENT_SOURCE_DIR}/config.py ${CMAKE_CURRENT_BINARY_DIR}/config.py @ONLY)

tests/simulator/refinement/CMakeLists.txt

@@ -10,7 +10,12 @@ endif()
 if(HighFive)
   ## These test use dump diagnostics so require HighFive!
   if(testMPI)
-    phare_mpi_python3_exec(9 2  simple_2d_refinement test_2d_2_core.py  ${CMAKE_CURRENT_BINARY_DIR})
-    phare_mpi_python3_exec(11 10 complex_2d_refinement test_2d_10_core.py  ${CMAKE_CURRENT_BINARY_DIR})
+
+    # disabled due to https://github.com/PHAREHUB/PHARE/issues/853
+    # phare_mpi_python3_exec(11 10 complex_2d_refinement test_2d_10_core.py  ${CMAKE_CURRENT_BINARY_DIR})
+
   endif(testMPI)
+
+  phare_python3_exec(9 simple_2d_refinement test_2d_2_core.py  ${CMAKE_CURRENT_BINARY_DIR})
+
 endif()