[RF] Smoothing (#404)

- quick fix for bold workflow
PennLINC · Aug 10, 2022 · 5a77480 · 5a77480
1 parent ca6fd99
commit 5a77480
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/xcp_d/workflow/bold.py b/xcp_d/workflow/bold.py
@@ -415,8 +415,9 @@ def init_boldpostprocess_wf(lower_bpf,
         workflow.connect([
             (rm_dummytime, censor_scrub, [
                 ('bold_file_dropped_TR', 'in_file'),
-                ('fmriprep_confounds_file_dropped_TR', 'fmriprep_confounds_file')
-                ('custom_confounds_dropped', 'custom_confounds')])])
+                ('fmriprep_confounds_file_dropped_TR', 'fmriprep_confounds_file'),
+                ('custom_confounds_dropped', 'custom_confounds')
+                ])])
 
     else:  # No need to remove TR
         # Censor Scrub:

diff --git a/xcp_d/workflow/restingstate.py b/xcp_d/workflow/restingstate.py
@@ -74,7 +74,7 @@ def init_compute_alff_wf(mem_gb,
     smoothed_alff
         smoothed alff  output
     tmask
-        temporal mask
+        temporal mask  #TODO: Fix, this is inaccurate
     """
 
     workflow = Workflow(name=name)
@@ -122,7 +122,7 @@ def init_compute_alff_wf(mem_gb,
         """.format(kernelsize=str(smoothing))
             smooth_data = pe.Node(Smooth(output_type='NIFTI_GZ',
                                          fwhm=smoothing),
-                                  name="ciftismoothing",
+                                  name="ciftismoothing", #TODO: Rename to nifti smoothing
                                   mem_gb=mem_gb,
                                   n_procs=omp_nthreads)
             workflow.connect([