0.7.1rc2

What's Changed

Other Changes

• Adopt Nipreps-style Config object by @tsalo in #1040

Full Changelog: 0.7.0...0.7.1rc2

0.7.1rc1

What's Changed

Other Changes

• Adopt Nipreps-style Config object by @tsalo in #1040

Full Changelog: 0.7.0...0.7.1rc1

0.7.0

This is a large, backwards-incompatible release. The changes in this release mostly stem from reviewer comments on the XCP-D manuscript.

I expect to release 0.7.1, which will add the NiPreps Config object, very soon.

What's Changed

🛠 Breaking Changes

• [DCAN] Remove --dcan-qc parameter by @tsalo in #1096
• Bring outputs up to date with BEPs 11, 12, 17, and 38 by @tsalo in #1065
• Stop appending "xcp_d" to output directory by @tsalo in #1061

🎉 Exciting New Features

• Create reformatted BrainSwipes figures for HBCD QC by @tsalo in #1091

Other Changes

• Add information about ReHo to read-the-docs by @kahinimehta in #1097
• Update landing page figure by @kahinimehta in #1099
• Add band over censored volumes in executive summary carpet plots by @tsalo in #1077
• Fix image link by @psychelzh in #1100

Full Changelog: 0.6.4...0.7.0

0.7.0rc1

What's Changed

🛠 Breaking Changes

• [DCAN] Remove --dcan-qc parameter by @tsalo in #1096
• Bring outputs up to date with BEPs 11, 12, 17, and 38 by @tsalo in #1065
• Stop appending "xcp_d" to output directory by @tsalo in #1061

Other Changes

• Add information about ReHo to read-the-docs by @kahinimehta in #1097
• Update landing page figure by @kahinimehta in #1099
• Add band over censored volumes in executive summary carpet plots by @tsalo in #1077

Full Changelog: 0.6.4...0.7.0rc1

0.6.4

What's Changed

🎉 Exciting New Features

• Replace bids:xcp_d: BIDS URI with bids:: by @tsalo in #1088

👎 Deprecations

• [DCAN] Enable DCAN QC by default by @tsalo in #1086

🐛 Bug Fixes

• Raise error if atlas affines don't match across participants by @tsalo in #1075
• Fix query error report in collect_mesh_data by @tsalo in #1092
• Adopt Lindquist-compliant denoising method by @tsalo in #1087

Other Changes

• Update changelog for 0.6.3 by @tsalo in #1079

Full Changelog: 0.6.3...0.6.4

0.6.3

What's Changed

🎉 Exciting New Features

• Make "DatasetType" key recommended, not required by @tsalo in #1068

🐛 Bug Fixes

• Do not warn if fd-thresh and min-time are both set to 0 by @tsalo in #1071
• Use copy_atlas to write out atlas tsv and json files by @tsalo in #1073
• Raise error if FS_LICENSE environment variable is not an existing file by @tsalo in #1072
• Generate T2w executive summary plots when T1w is also available by @tsalo in #1078

Other Changes

• Add release notes for releases 0.6.1 and 0.6.2 by @tsalo in #1070

Full Changelog: 0.6.2...0.6.3

0.6.2

What's Changed

🐛 Bug Fixes

• Raise interpretable error when no BOLD runs survive minimum-time threshold by @tsalo in #1048
• Address bug with T2w-only processing by @tsalo in #1060
• Use strict file-matching in collect_run_data by @tsalo in #1063
• Fix potential atlas file race condition by @tsalo in #1066

Other Changes

• Make description of smoothing parameter clearer when set to 0 by @psychelzh in #1056

Full Changelog: 0.6.1...0.6.2

0.6.1

What's Changed

🛠 Breaking Changes

• Support ALFF for censored data by @tsalo in #1020
• Move atlases into a subfolder by @tsalo in #1024

🎉 Exciting New Features

• Add colorbar to ALFF and ReHo plots by @tsalo in #1023
• Add options for UK Biobank data by @tsalo in #1022
• Add options to subset atlases by @tsalo in #1034
• Support MCRIBS derivatives by @tsalo in #1029
• Add --stop-on-first-crash option to command-line interface by @tsalo in #1044

🐛 Bug Fixes

• Rescale ALFF based on original BOLD standard deviation by @tsalo in #1033
• Drop dir entity from concatenated filenames by @tsalo in #1037
• Fix dscalar CIFTI generation by @tsalo in #1036
• Fix TR in denoised NIfTI headers by @tsalo in #1038

Other Changes

• Add dependabot Action by @tsalo in #1006
• Update to Python 3.10 by @tsalo in #1016
• Update docker image link by @psychelzh in #1045

New Contributors

• @dependabot made their first contribution in #1007
• @psychelzh made their first contribution in #1045

Full Changelog: 0.6.0...0.6.1

0.6.1rc1

This release adds support for UK Biobank preprocessing derivatives, for the NiCharts project.

What's Changed

🛠 Breaking Changes

• Support ALFF for censored data by @tsalo in #1020
• Move atlases into a subfolder by @tsalo in #1024

🎉 Exciting New Features

• Add colorbar to ALFF and ReHo plots by @tsalo in #1023
• Add options for UK Biobank data by @tsalo in #1022

🐛 Bug Fixes

• Rescale ALFF based on original BOLD standard deviation by @tsalo in #1033

Other Changes

• Add dependabot Action by @tsalo in #1006
• Update to Python 3.10 by @tsalo in #1016

New Contributors

• @dependabot made their first contribution in #1007

Full Changelog: 0.6.0...0.6.1rc1

0.6.0

What's Changed

🛠 Breaking Changes

• Replace Schaefer atlases with AtlasPack by @tsalo in #928
• Update the QC metrics by @tsalo in #958
• Track Sources for outputs with BIDS URIs by @tsalo in #966
• Replace AtlasPack 0.0.5 atlases with AtlasPack 0.1.0 atlases by @tsalo in #991

🎉 Exciting New Features

• Split HCP tasks into task and run entities by @tsalo in #952
• Concatenate across directions as well as runs by @tsalo in #965
• Retain orthogonalized confounds by @tsalo in #975
• Improve connectivity plots by @tsalo in #988
• Produce correlation matrices for concatenated time series by @tsalo in #990

🐛 Bug Fixes

• Fix resting-state plots in executive summary by @tsalo in #941
• Load T1w-to-standard transform to same space as volumetric BOLD scan by @tsalo in #926
• Pin Nilearn version by @tsalo in #955
• Don't interpolate volumes at beginning/end of run by @tsalo in #950
• Look for flirtbbr figure by @tsalo in #980
• Make registration figure in executive summary optional by @tsalo in #981
• Don't convert CIFTIs to int16 by @tsalo in #979
• Store temporary files in working directory by @tsalo in #985
• Fix HCP ingression for non-rest tasks by @tsalo in #986
• Allow executive summary registration figure to really be empty by @tsalo in #987
• Allow motion filtering when motion-based censoring is disabled by @tsalo in #994
• Fix node labels and communities in Gordon atlas by @tsalo in #996
• Fix coverage CIFTIs by @tsalo in #998
• Remove unused native-space support by @tsalo in #1003

Other Changes

• Update documentation for 0.5.0 release by @tsalo in #937
• Try to reduce memory requirements of functional connectivity nodes by @tsalo in #982
• Try to reduce memory requirements of denoising node by @tsalo in #989
• Prepare for 0.6.0 by @tsalo in #1005

Full Changelog: 0.5.0...0.6.0