0.6.0rc6

What's Changed

🛠 Breaking Changes

• Replace AtlasPack 0.0.5 atlases with AtlasPack 0.1.0 atlases by @tsalo in #991

🎉 Exciting New Features

• Improve connectivity plots by @tsalo in #988
• Produce correlation matrices for concatenated time series by @tsalo in #990

🐛 Bug Fixes

• Allow motion filtering when motion-based censoring is disabled by @tsalo in #994
• Fix node labels and communities in Gordon atlas by @tsalo in #996

Other Changes

• Try to reduce memory requirements of denoising node by @tsalo in #989

Full Changelog: 0.6.0rc5...0.6.0rc6

0.6.0rc5

What's Changed

🐛 Bug Fixes

• Allow executive summary registration figure to really be empty by @tsalo in #987

Full Changelog: 0.6.0rc4...0.6.0rc5

0.6.0rc4

What's Changed

🐛 Bug Fixes

• Fix HCP ingression for non-rest tasks by @tsalo in #986

Full Changelog: 0.6.0rc3...0.6.0rc4

0.6.0rc3

What's Changed

🐛 Bug Fixes

• Don't convert CIFTIs to int16 by @tsalo in #979
• Store temporary files in working directory by @tsalo in #985

Other Changes

• Try to reduce memory requirements of functional connectivity nodes by @tsalo in #982

Full Changelog: 0.6.0rc2...0.6.0rc3

0.6.0rc2

What's Changed

🐛 Bug Fixes

• Make registration figure in executive summary optional by @tsalo in #981

Full Changelog: 0.6.0rc1...0.6.0rc2

0.6.0rc1

What's Changed

🛠 Breaking Changes

• Replace Schaefer atlases with AtlasPack by @tsalo in #928
• Update the QC metrics by @tsalo in #958
• Track Sources for outputs with BIDS URIs by @tsalo in #966

🎉 Exciting New Features

• Split HCP tasks into task and run entities by @tsalo in #952
• Concatenate across directions as well as runs by @tsalo in #965
• Retain orthogonalized confounds by @tsalo in #975

🐛 Bug Fixes

• Fix resting-state plots in executive summary by @tsalo in #941
• Load T1w-to-standard transform to same space as volumetric BOLD scan by @tsalo in #926
• Pin Nilearn version by @tsalo in #955
• Don't interpolate volumes at beginning/end of run by @tsalo in #950
• Look for flirtbbr figure by @tsalo in #980

Other Changes

• Update documentation for 0.5.0 release by @tsalo in #937

Full Changelog: 0.5.0...0.6.0rc1

0.5.2

What's Changed

Other Changes

• Fix HCP ingression for non-rest tasks. by @tsalo in #972

Full Changelog: 0.5.1...0.5.2

0.5.1

What's Changed

Other Changes

• Update documentation for 0.5.0 release by @tsalo in #937
• Reproduce recent changes for 0.5.1 by @tsalo in #964
• Update docs for 0.5.1 by @tsalo in #969

Full Changelog: 0.5.0...0.5.1

0.5.0

The 0.5.0 release prepares for the XCP-D manuscript, so I plan to not introduce any backwards-incompatible changes between this release and 1.0.0 (the official paper release).

What's Changed

🛠 Breaking Changes

• Add CIFTI subcortical atlas to XCP-D by @tsalo in #864
• Change "ciftiSubcortical" atlas name to "HCP" by @tsalo in #932

🎉 Exciting New Features

• Write out top-level sidecar for PennLINC QC file by @tsalo in #894
• Parcellate ReHo, ALFF, and surface morphometric maps by @tsalo in #839
• Refactor dcan/hcp ingestion and add more surface files by @tsalo in #887
• Add "none" option for denoising by @tsalo in #879
• Add --exact-time parameter by @tsalo in #885
• Allow white matter surface suffix to be either "_smoothwm" or "_white" by @tsalo in #899
• Add --fs-license-file parameter to command line interface by @tsalo in #930
• Generate executive summary figures without --dcan-qc by @tsalo in #936

🐛 Bug Fixes

• Standardize executive summary carpet if params is "none" by @tsalo in #916
• Support CIFTI morphometry files and add PNC test data by @tsalo in #922
• Correct ABCD/HCP surface ingression by @tsalo in #927

Other Changes

• Add contributing documentation by @tsalo in #893
• Update changelog and CFF file for 0.4.0 by @tsalo in #896
• Change packaging to use hatch-vcs and pyproject.toml by @tsalo in #897
• Fix description of signal denoising method in docs by @tsalo in #898
• Improve QC sidecar contents by @tsalo in #900
• Rename the parcellated ALFF/ReHo outputs by @tsalo in #902
• Remove workaround for nonbinary Nibabies brain masks by @tsalo in #905
• Update Landing Page Figure by @kahinimehta in #908
• Remove unused functions in filemanip module by @tsalo in #911
• Add tests for xcp_d.utils.utils module by @tsalo in #910
• Add tests for xcp_d.utils.execsummary module by @tsalo in #912
• Expand tests by @tsalo in #913
• Test CLI parameter validation by @tsalo in #918
• Refactor collection functions by @tsalo in #917

Full Changelog: 04.0...0.5.0

0.5.0rc2

This fixes the atlas name for the CIFTI subcortical atlas.

What's Changed

🛠 Breaking Changes

• Change "ciftiSubcortical" atlas name to "HCP" by @tsalo in #932

Full Changelog: 0.5.0rc1...0.5.0rc2