Daily runs #715
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| name: Daily runs | |
| on: | |
| schedule: | |
| - cron: '0 5 * * *' | |
| push: | |
| paths: | |
| - '.github/workflows/daily.yml' | |
| jobs: | |
| linux-daily-unittests: | |
| name: "Linux - daily unit tests - Python ${{ matrix.PYTHON_VERSION}} - ${{ matrix.NOTE }}" | |
| runs-on: ubuntu-latest | |
| env: | |
| CI: True | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| include: | |
| - PYTHON_VERSION: '3.10' | |
| NOTE: 'Nightly Builds' # run once with nightlies | |
| - PYTHON_VERSION: '3.10' | |
| NOTE: 'Default Builds' # run once with normal dependencies | |
| steps: | |
| - name: Checkout branch | |
| uses: actions/checkout@v4 | |
| - uses: mamba-org/setup-micromamba@875557da4ee020f18df03b8910a42203fbf02da1 | |
| with: | |
| environment-file: environment.yml | |
| create-args: >- | |
| python=${{ matrix.PYTHON_VERSION }} | |
| - name: Install nightlies | |
| if: matrix.NOTE == 'Nightly Builds' | |
| shell: bash -el {0} | |
| run: | | |
| # needed for tabmat | |
| echo "Install compilation dependencies" | |
| micromamba install -y c-compiler cxx-compiler cython jemalloc-local libgomp mako xsimd | |
| PRE_WHEELS="https://pypi.anaconda.org/scipy-wheels-nightly/simple" | |
| for pkg in numpy pandas scikit-learn scipy; do | |
| echo "Installing $pkg nightly" | |
| micromamba remove -y --force $pkg | |
| pip install --pre --no-deps --only-binary :all: --upgrade --timeout=60 -i $PRE_WHEELS $pkg | |
| done | |
| echo Install tabmat nightly | |
| micromamba remove -y --force tabmat | |
| pip install git+https://github.com/Quantco/tabmat | |
| - name: Install repository | |
| shell: bash -el {0} | |
| run: pip install --no-use-pep517 --no-deps --disable-pip-version-check -e . | |
| - name: Run pytest | |
| shell: bash -el {0} | |
| run: pytest -nauto tests/glm --doctest-modules src/glum/ | |
| - name: Run doctest | |
| shell: bash -el {0} | |
| # Check that the readme example will work by running via doctest. | |
| # We run outside the repo to make the test a bit more similar to | |
| # a user running after installing with conda. | |
| run: | | |
| mkdir ../temp | |
| cp README.md ../temp | |
| cd ../temp | |
| python -m doctest -v README.md | |
| - name: Issue on failure | |
| uses: actions/github-script@v6 | |
| if: ${{ failure() }} | |
| with: | |
| script: | | |
| github.rest.issues.listForRepo({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| state: "open", | |
| labels: "[bot] Daily run" | |
| }).then((issues) => { | |
| if (issues.data.length === 0){ | |
| github.rest.issues.create({ | |
| owner: context.repo.owner, | |
| repo: context.repo.repo, | |
| title: "Daily run failure: Unit tests", | |
| body: "The daily unit tests failed. See https://github.com/Quantco/glum/actions/runs/${{ github.run_id }} for details.", | |
| assignees: ["MarcAntoineSchmidtQC"], | |
| labels: ["[bot] Daily run"] | |
| }) | |
| } | |
| }); |