v2.2.1

2.2.1 (2024-07-26)

Bug Fixes

• also enlist ref for juno mapping (c6856d6)

v2.2.0

2.2.0 (2024-07-25)

Features

• allow list as input type (254e1c8)

Bug Fixes

• fix typing (a135eb9)
• force tuple (46c3608)
• switch input_type to tuple (f406df2)

v0.2.10

Full Changelog: v0.2.9...v0.2.10

Only used for old versions of juno-assembly (v2.2.2), other pipelines using this version have been upgraded

v2.1.3

2.1.3 (2024-02-09)

Bug Fixes

• catch error if sample has multiple libraries (cff035a)
• error message (b66b9d5)
• parse illumina library correctly (2fd54a7)

v2.1.2

2.1.2 (2024-01-25)

Bug Fixes

• restrict snakemake to v7 (393726c)

Remove anaconda and defaults

Removeanaconda and defaults channel and add nodefaults channel to conda environments

v2.1.0

2.1.0 (2023-07-04)

Features

• add enlisting of bam and reference (4ef4be6)
• add vcf input files for mapping pipelines (cf98af3)
• include vcf in tests (cdcef21)

Bug Fixes

• correct vcf directory name (6512211)
• Fix juno_metadata not existing (9a478dd)
• fix unit test (ba8eee1)
• include vcf in checks (3e73986)

v2.0.1

2.0.1 (2023-04-18)

Bug Fixes

• Make sure library also works in python 3.8 (fb9e7f6)

v2.0.0

2.0.0 (2023-03-23)

⚠ BREAKING CHANGES

• Move snakemake args to dict

Features

• Add no-containers flag (9a5e33a)

Bug Fixes

• Make filepaths absolute (375c661)

Code Refactoring

• Move snakemake args to dict (afcd5d8)

Documentation

• Add docstrings to new functions (fec95b9)

Dependencies

• Update dependencies (74db4f5)

v1.0.1

1.0.1 (2023-02-02)

Features

• Add py.typed (d49c3a6)