Truncated sam File from Resfinder Database

[hafizmtalha]

I am trying to run MGmapper using Resfinder and Bacteria Database. the following same issue arises everytime on ResFinder database due to which the bam file comes empty. how to counter this ???

[samopen] SAM header is present: 2131 sequences.
[sam_read1] reference 'ID:bwa PN:bwa VN:0.7.17-r1198-dirty CL:/usr/local/bin/bwa mem -t 10 -M -p /media/9ce95615-e5d7-4b70-a54a-89fbb011c595/Softwares/MGmapper_v2.04/ResFinder/ResFinder -
46
@sq SN:aac(2_)-Id_1_U72743 LN:633
@sq SN:aac(2_)-Ie_1_NC_011896 LN:549
@sq SN:aac(!' is recognized as '*'.
[main_samview] truncated file.

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[zorbax]

Hi @hafizmtalha, this is not the official repository, but maybe I can help you. Which version of bwa and samtools are you using? MGmapper has been tested with bwa(0.7.12) and samtools(0.1.18).

[hafizmtalha]

@zorbax thanks for replyng..
bwa = 0.7.17
tried samtools = 1.9 & 0.1.19