sort alt allele order #83

Job	Run time
Validate generated WDLs using womtools	14m 18s
Validate script WDLs using womtools	52s
build and push gatk docker to artifacts	16m 44s
check if the environment has privileges	1s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	1m 44s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	1m 45s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	1m 34s
WDL test RUN_M2_WDL on cromwell	1m 33s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	1m 48s
Java 17.0.6+10 build and test cloud	3m 42s
Java 17.0.6+10 build and test integration	31m 51s
Java 17.0.6+10 build and test unit	19m 17s
Java 17.0.6+10 test on docker integration	5m 38s
Java 17.0.6+10 test on docker unit	5m 39s
Java 17.0.6+10 test on docker variantcalling	5m 39s
Java 17.0.6+10 test on docker conda	5m 39s
	1h 57m 44s

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