phase threshold #100
Schaudgegatk-tests.yml
on: push
check if the environment has privileges
0s
build and push gatk docker to artifacts
11m 53s
Validate script WDLs using womtools
58s
Validate generated WDLs using womtools
13m 53s
Matrix: wdlTests
Matrix: test
Matrix: testOnDocker
Annotations
11 errors and 16 warnings
|
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
Process completed with exit code 128.
|
|
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
Process completed with exit code 128.
|
|
WDL test RUN_CNV_SOMATIC_WDL on cromwell
Process completed with exit code 128.
|
|
WDL test RUN_M2_WDL on cromwell
Process completed with exit code 128.
|
|
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
Process completed with exit code 128.
|
|
Java 17.0.6+10 test on docker conda
Process completed with exit code 125.
|
|
Java 17.0.6+10 test on docker variantcalling
Process completed with exit code 125.
|
|
Java 17.0.6+10 test on docker integration
Process completed with exit code 125.
|
|
Java 17.0.6+10 build and test unit
Process completed with exit code 1.
|
|
Java 17.0.6+10 test on docker unit
Process completed with exit code 125.
|
|
Java 17.0.6+10 build and test integration
Process completed with exit code 1.
|
|
check if the environment has privileges
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Validate script WDLs using womtools
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
WDL test RUN_CNV_SOMATIC_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
WDL test RUN_M2_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Java 17.0.6+10 build and test cloud
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
|
|
build and push gatk docker to artifacts
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Validate generated WDLs using womtools
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Java 17.0.6+10 test on docker conda
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
|
|
Java 17.0.6+10 test on docker variantcalling
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
|
|
Java 17.0.6+10 test on docker integration
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
|
|
Java 17.0.6+10 build and test unit
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
|
Java 17.0.6+10 test on docker unit
No files were found with the provided path: build/reports/tests. No artifacts will be uploaded.
|
|
Java 17.0.6+10 build and test integration
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
|
Artifacts
Produced during runtime
| Name | Size | |
|---|---|---|
|
gatkDockerImage
|
2.2 GB |
|
|
test-results-17.0.6+10-integration
|
4.53 MB |
|
|
test-results-17.0.6+10-unit
|
5.55 MB |
|