Patient and microbial genomic factors associated with carbapenem-resistant Klebsiella pneumoniae extraintestinal colonization and infection

Code and some data relevant to this manuscript. Manuscript here.

Please note that, since some of the data we used is PHI, we are not able to provide full reproducibility; however, all scripts used to perform the analyses are included in the scripts directory and we provide the genomic data used as input to the machine learning models.