Merge branch 'master' into formatting

StanfordMIMI · Sep 25, 2023 · 6a60cb0 · 6a60cb0
2 parents 8ed337f + 5f4e282
commit 6a60cb0
Show file tree

Hide file tree

Showing 2 changed files with 4 additions and 10 deletions.
diff --git a/comp2comp/aaa/aaa.py b/comp2comp/aaa/aaa.py
@@ -234,6 +234,8 @@ def __call__(self, inference_pipeline):
                 areas = [cv2.contourArea(c) for c in contours]
                 sorted_areas = np.sort(areas)
 
+                areas = [cv2.contourArea(c) for c in contours]
+                sorted_areas = np.sort(areas)
                 contours = contours[areas.index(sorted_areas[-1])]
 
                 img.copy()

diff --git a/comp2comp/hip/hip_utils.py b/comp2comp/hip/hip_utils.py
@@ -41,11 +41,7 @@ def compute_rois(medical_volume, segmentation, model, output_dir, save=False):
     ) = get_femural_head_roi(
         right_femur_mask, medical_volume, output_dir, "right_intertrochanter"
     )
-    (
-        left_neck_roi,
-        left_neck_centroid,
-        left_neck_hu,
-    ) = get_femural_neck_roi(
+    (left_neck_roi, left_neck_centroid, left_neck_hu,) = get_femural_neck_roi(
         left_femur_mask,
         medical_volume,
         left_intertrochanter_roi,
@@ -54,11 +50,7 @@ def compute_rois(medical_volume, segmentation, model, output_dir, save=False):
         left_head_centroid,
         output_dir,
     )
-    (
-        right_neck_roi,
-        right_neck_centroid,
-        right_neck_hu,
-    ) = get_femural_neck_roi(
+    (right_neck_roi, right_neck_centroid, right_neck_hu,) = get_femural_neck_roi(
         right_femur_mask,
         medical_volume,
         right_intertrochanter_roi,