Add ctest script to CI. #6
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ### | ||
| # Build hdf5 dependencies and cache them in a combined directory. | ||
| ### | ||
| name: Run CDash Ubuntu/Linux netCDF Tests | ||
| on: [pull_request, workflow_dispatch] | ||
| jobs: | ||
| build-deps-cdash: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| hdf5: [ 1.10.8, 1.12.2, 1.14.0 ] | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Install System dependencies | ||
| shell: bash -l {0} | ||
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev doxygen openssl | ||
| ### | ||
| # Installing libhdf5 | ||
| ### | ||
| - name: Cache libhdf5-${{ matrix.hdf5 }} | ||
| id: cache-hdf5 | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: ~/environments/${{ matrix.hdf5 }} | ||
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | ||
| - name: Build libhdf5-${{ matrix.hdf5 }} | ||
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | ||
| run: | | ||
| set -x | ||
| wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 | ||
| tar -jxf hdf-4.2.15.tar.bz2 | ||
| pushd hdf-4.2.15 | ||
| ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-hdf4-xdr | ||
| make -j | ||
| make install -j | ||
| popd | ||
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | ||
| tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | ||
| pushd hdf5-${{ matrix.hdf5 }} | ||
| ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib | ||
| make -j | ||
| make install -j | ||
| popd | ||
| build-deps-parallel: | ||
| runs-on: ubuntu-latest | ||
| strategy: | ||
| matrix: | ||
| hdf5: [ 1.14.0 ] | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Install System dependencies | ||
| shell: bash -l {0} | ||
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev mpich libmpich-dev | ||
| ### | ||
| # Installing libhdf5 | ||
| ### | ||
| - name: Cache libhdf5-parallel-${{ matrix.hdf5 }} | ||
| id: cache-hdf5 | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: ~/environments/${{ matrix.hdf5 }} | ||
| key: hdf5-parallel-${{ runner.os }}-${{ matrix.hdf5 }} | ||
| - name: Build libhdf5-${{ matrix.hdf5 }}-pnetcdf-1.12.3 | ||
| if: steps.cache-hdf5.outputs.cache-hit != 'true' | ||
| run: | | ||
| set -x | ||
| wget https://support.hdfgroup.org/ftp/HDF/releases/HDF4.2.15/src/hdf-4.2.15.tar.bz2 | ||
| tar -jxf hdf-4.2.15.tar.bz2 | ||
| pushd hdf-4.2.15 | ||
| CC=mpicc ./configure --prefix=${HOME}/environments/${{ matrix.hdf5 }} --disable-static --enable-shared --disable-fortran --disable-netcdf --with-szlib --enable-parallel --enable-hdf4-xdr | ||
| make -j | ||
| make install -j | ||
| popd | ||
| wget https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-$(echo ${{ matrix.hdf5 }} | cut -d. -f 1,2)/hdf5-${{ matrix.hdf5 }}/src/hdf5-${{ matrix.hdf5 }}.tar.bz2 | ||
| tar -jxf hdf5-${{ matrix.hdf5 }}.tar.bz2 | ||
| pushd hdf5-${{ matrix.hdf5 }} | ||
| CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} --enable-hl --with-szlib --enable-parallel | ||
| make -j | ||
| make install -j | ||
| popd | ||
| wget https://parallel-netcdf.github.io/Release/pnetcdf-1.12.3.tar.gz | ||
| tar -zxf pnetcdf-1.12.3.tar.gz | ||
| pushd pnetcdf-1.12.3 | ||
| CC=mpicc ./configure --disable-static --enable-shared --prefix=${HOME}/environments/${{ matrix.hdf5 }} | ||
| make -j | ||
| make install -j | ||
| popd | ||
| ### | ||
| # Run CTest Serial Script | ||
| ### | ||
| nc-ctest-serial: | ||
| needs: build-deps-cdash | ||
| runs-on: ubuntu-latest | ||
| environment: CDashCI | ||
| strategy: | ||
| matrix: | ||
| hdf5: [ 1.10.8, 1.12.2, 1.14.0 ] | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - name: Install System dependencies | ||
| shell: bash -l {0} | ||
| run: sudo apt update && sudo apt install -y libaec-dev zlib1g-dev automake autoconf libcurl4-openssl-dev libjpeg-dev wget curl bzip2 m4 flex bison cmake libzip-dev | ||
| ### | ||
| # Set Environmental Variables | ||
| ### | ||
| - run: echo "CMAKE_PREFIX_PATH=${HOME}/environments/${{ matrix.hdf5 }}/" >> $GITHUB_ENV | ||
| - run: echo "LD_LIBRARY_PATH=${HOME}/environments/${{ matrix.hdf5 }}/lib" >> $GITHUB_ENV | ||
| - run: echo "CTEST_OUTPUT_ON_FAILURE=1" >> $GITHUB_ENV | ||
| ### | ||
| # Fetch Cache | ||
| ### | ||
| - name: Fetch HDF Cache | ||
| id: cache-hdf5 | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: ~/environments/${{ matrix.hdf5 }} | ||
| key: hdf5-${{ runner.os }}-${{ matrix.hdf5 }} | ||
| - name: Check Cache | ||
| shell: bash -l {0} | ||
| run: ls ${HOME}/environments/${{ matrix.hdf5 }} && ls ${HOME}/environments/${{ matrix.hdf5}}/lib | ||
| - name: Run ctest serial script | ||
| with: # Access the CDash TOken | ||
| CDASH_TOKEN: ${{ secrets.CDASH_TOKEN }} | ||
| shell: bash -l {0} | ||
|
Check failure on line 159 in .github/workflows/run_tests_cdash.yml
|
||
| run: | | ||
| mkdir build | ||
| cd build | ||
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 -V -S ../ctest_scripts/ctest_serial.ctest | ||
| - name: Verbose Output if CTest Failure | ||
| shell: bash -l {0} | ||
| run: | | ||
| cd build | ||
| LD_LIBRARY_PATH=${LD_LIBRARY_PATH} ctest -j 12 --rerun-failed --output-on-failure -VV | ||
| if: ${{ failure() }} | ||
