Address nbval deprecation warning

a-r-j · Aug 3, 2024 · eaac7ec · eaac7ec
1 parent b8e9cfe
commit eaac7ec
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Showing 3 changed files with 3 additions and 3 deletions.
diff --git a/.github/workflows/build.yaml b/.github/workflows/build.yaml
@@ -73,4 +73,4 @@ jobs:
       - name: Run unit tests and generate coverage report
         run: pytest .
       - name: Test notebook execution
-        run: pytest --nbval-lax notebooks/ --current-env --ignore-glob="notebooks/dataloader_tutorial.ipynb" --ignore-glob="notebooks/datasets_and_dataloaders.ipynb" --ignore-glob="notebooks/foldcomp.ipynb" --ignore-glob="notebooks/grn_tutorial.ipynb"
+        run: pytest --nbval-lax notebooks/ --nbval-current-env --ignore-glob="notebooks/dataloader_tutorial.ipynb" --ignore-glob="notebooks/datasets_and_dataloaders.ipynb" --ignore-glob="notebooks/foldcomp.ipynb" --ignore-glob="notebooks/grn_tutorial.ipynb"
diff --git a/.github/workflows/code-tests-docker.yaml b/.github/workflows/code-tests-docker.yaml
@@ -57,7 +57,7 @@ jobs:
 
       - name: Run example notebooks (Docker)
         run: |
-          docker exec $(docker ps -q) bash -c 'grep -l smoke_test notebooks/*.ipynb | pytest --nbval-lax --current-env'
+          docker exec $(docker ps -q) bash -c 'grep -l smoke_test notebooks/*.ipynb | pytest --nbval-lax --nbval-current-env'
 
       - name: Upload code coverage
         run: |

diff --git a/.github/workflows/minimal__install.yaml b/.github/workflows/minimal__install.yaml
@@ -50,4 +50,4 @@ jobs:
       - name: Run unit tests and generate coverage report
         run: pytest . --ignore-glob="tests/protein/tensor" --ignore="tests/ml/test_conversion.py" --ignore="tests/ml/test_torch_geometric_dataset.py"
       - name: Test notebook execution
-        run: pytest --nbval-lax notebooks/ --current-env --ignore-glob="notebooks/dataloader_tutorial.ipynb" --ignore-glob="notebooks/higher_order_graphs.ipynb" --ignore-glob="notebooks/protein_graph_analytics.ipynb" --ignore-glob="notebooks/subgraphing_tutorial.ipynb" --ignore-glob="notebooks/splitting_a_dataset.ipynb" --ignore-glob="notebooks/protein_tensors.ipynb" --ignore-glob="notebooks/datasets_and_dataloaders.ipynb" --ignore-glob="notebooks/foldcomp.ipynb" --ignore-glob="notebooks/creating_datasets_from_the_pdb.ipynb" --ignore-glob="notebooks/grn_tutorial.ipynb"
+        run: pytest --nbval-lax notebooks/ --nbval-current-env --ignore-glob="notebooks/dataloader_tutorial.ipynb" --ignore-glob="notebooks/higher_order_graphs.ipynb" --ignore-glob="notebooks/protein_graph_analytics.ipynb" --ignore-glob="notebooks/subgraphing_tutorial.ipynb" --ignore-glob="notebooks/splitting_a_dataset.ipynb" --ignore-glob="notebooks/protein_tensors.ipynb" --ignore-glob="notebooks/datasets_and_dataloaders.ipynb" --ignore-glob="notebooks/foldcomp.ipynb" --ignore-glob="notebooks/creating_datasets_from_the_pdb.ipynb" --ignore-glob="notebooks/grn_tutorial.ipynb"