Refactor fasta reader index usage and allow filelike object use

[GarrettNg]

The fasta implementation was a little tricky since there are multiple relevant readers upstream in noodles: fasta::Reader, fasta::IndexedReader, and fasta::fai::Reader. The core records_to_ipc function relies on the query method supplied by the fasta::Reader, so the fasta::Reader was turned into a FastaReader struct field. Since the query method also relies on the fasta index, index was made into a FastaReader struct field and is now read through a separate fasta::fai::Reader instead of using the fasta::IndexedReader, which has access to the index, but lacks the query method. (EDIT: yes it does have a query method)

Filelike object compatability was also implemented in line with the other readers, and generics have been sprinkled about accordingly.

Also now provides a proper error message when a .fai index file can't be found instead of providing a generic "file not found" error which a user may attribute to the fasta file and not the index file.

[GarrettNg]

I'm going to revisit to make it use the IndexedReader when possible. Also, the IndexedReader does have a query method.