Merge pull request #27 from alliance-genome/ZFIN_blastFiles

add more blast files
alliance-genome · Jun 26, 2024 · 568a2fa · 568a2fa
2 parents ff74a45 + 93b7fb6
commit 568a2fa
Showing 1 changed file with 123 additions and 3 deletions.
diff --git a/conf/ZFIN/databases.ZFIN.production.json b/conf/ZFIN/databases.ZFIN.production.json
@@ -1,7 +1,7 @@
 {
   "data": [
     {
-      "uri": "https://zfin.org/downloads/ensembl_zf.fa",
+      "uri": "https://zfin.org/downloads/ensembl_zf.fa.gz",
       "bioproject": "???",
       "blast_title": "Ensembl Transcripts",
       "description": "Ensembl Transcripts",
@@ -13,7 +13,43 @@
       "version": "production"
     },
     {
-      "uri": "https://zfin.org/downloads/crispr_fasta.fa",
+      "uri": "https://zfin.org/downloads/LoadedMicroRNAStemLoop.fa.gz",
+      "bioproject": "???",
+      "blast_title": "mirRNA Mature",
+      "description": "mirRNA Mature",
+      "genus": "Danio",
+      "md5sum": "12ea6952a3a7d67813680c4db7c78f80",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/loadedFishMircoRNAStemLoop.fa.gz",
+      "bioproject": "???",
+      "blast_title": "mirRNA Stem Loop",
+      "description": "mirRNA Stem Loop",
+      "genus": "Danio",
+      "md5sum": "cc77629624fc6e80abe5353e59dc1e83",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/ZFINGenesWithExpression.fa.gz",
+      "bioproject": "???",
+      "blast_title": "ZFIN Genes With Expression",
+      "description": "All ZFIN genes and RNAs with expression data",
+      "genus": "Danio",
+      "md5sum": "ce82075dd3da95c3ad222f24f625ef4b",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/crispr_fasta.fa.gz",
       "bioproject": "???",
       "blast_title": "ZFIN CRISPR Sequences",
       "description": "ZFIN CRISPR Sequences",
@@ -25,7 +61,19 @@
       "version": "production"
     },
     {
-      "uri": "https://zfin.org/downloads/talen_fasta.fa",
+      "uri": "https://zfin.org/downloads/talen_fasta.fa.gz",
+      "bioproject": "???",
+      "blast_title": "ZFIN TALEN Sequences",
+      "description": "ZFIN TALEN Sequences",
+      "genus": "Danio",
+      "md5sum": "120d600be831a50d460872eb6f5e4d7c",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/zfin_mrph.fa.gz",
       "bioproject": "???",
       "blast_title": "ZFIN TALEN Sequences",
       "description": "ZFIN TALEN Sequences",
@@ -35,6 +83,78 @@
       "species": "rerio",
       "taxon_id": "NCBITaxon:7955",
       "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/zfin_cdna_seq.fa.gz",
+      "bioproject": "???",
+      "blast_title": "ZFIN cDNA Sequences",
+      "description": "ZFIN cDNA Sequences",
+      "genus": "Danio",
+      "md5sum": "120d600be831a50d460872eb6f5e4d7c",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/vega_transcript.fa.gz",
+      "bioproject": "???",
+      "blast_title": "VEGA Transcript",
+      "description": "VEGA Transcript",
+      "genus": "Danio",
+      "md5sum": "120d600be831a50d460872eb6f5e4d7c",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/vega_withdrawn.fa.gz",
+      "bioproject": "???",
+      "blast_title": "VEGA Withdrawn",
+      "description": "VEGA Withdrawn",
+      "genus": "Danio",
+      "md5sum": "120d600be831a50d460872eb6f5e4d7c",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/publishedProtein.fa.gz",
+      "bioproject": "???",
+      "blast_title": "Published Zebrafish Proteins",
+      "description": "Protein sequences published in papers and entered into ZFIN by ZFIN curators. These sequences can not be found via an accession number at GenBank.",
+      "genus": "Danio",
+      "md5sum": "120d600be831a50d460872eb6f5e4d7c",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/gbk_est_zf.fa.gz",
+      "bioproject": "???",
+      "blast_title": "EST Zebrafish",
+      "description": "Subset of GenBank that contains zebrafish sequences from EST division. Zebrafish sequences are parsed from the EST divisions by examining the organism lines for entries",
+      "genus": "Danio",
+      "md5sum": "120d600be831a50d460872eb6f5e4d7c",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
+    },
+    {
+      "uri": "https://zfin.org/downloads/gbk_zf_mrna.fa.gz",
+      "bioproject": "???",
+      "blast_title": "GenBank Zebrafish mRNA",
+      "description": "All GenBank mRNA sequences.",
+      "genus": "Danio",
+      "md5sum": "120d600be831a50d460872eb6f5e4d7c",
+      "seqtype": "nucl",
+      "species": "rerio",
+      "taxon_id": "NCBITaxon:7955",
+      "version": "production"
     }
   ],
   "metadata": {