Skip to content

Commit

Permalink
Merge pull request #36 from andreped/google-colab
Browse files Browse the repository at this point in the history
Added notebook for Colab; updated README to include both notebooks for macos and ubuntu
  • Loading branch information
andreped authored Sep 11, 2024
2 parents cd9f9c8 + 4d8c36c commit 95fca62
Show file tree
Hide file tree
Showing 3 changed files with 908 additions and 1 deletion.
3 changes: 2 additions & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -2,10 +2,11 @@

[![License](https://img.shields.io/badge/License-MIT-green.svg)](https://opensource.org/licenses/MIT)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.13745169.svg)](https://doi.org/10.5281/zenodo.13745169)
<a href="https://colab.research.google.com/gist/andreped/0e945c30ebb01b309a36162d9ec133ae/vsi2tif-converting-olympus-wsi-to-generic-tiff-ubuntu-linux.ipynb" target="_parent"><img src="https://colab.research.google.com/assets/colab-badge.svg" alt="Open In Colab"/></a>

Tool for converting WSIs from Olympus' cellSens VSI to Generic TIFF.

A simple Jupyter Notebook can be seen [here](https://github.com/andreped/vsi2tif/blob/main/notebooks/conversion_tutorial.ipynb) demonstrating how use the tool.
To quickly get started, see these notebooks ([Ubuntu Linux](https://github.com/andreped/vsi2tif/blob/main/notebooks/conversion_tutorial_ubuntu_linux.ipynb), [macOS](https://github.com/andreped/vsi2tif/blob/main/notebooks/conversion_tutorial_macos.ipynb)) for installing the tool, converting your first image, and verifying that the image works with OpenSlide.

## [Continuous integration](https://github.com/andreped/vsi2tif#continuous-integration)

Expand Down
File renamed without changes.
Loading

0 comments on commit 95fca62

Please sign in to comment.