[FIX] uncomment preprocessing in main

anfoss · Sep 8, 2021 · 23b2421 · 23b2421
1 parent f6784a2
commit 23b2421
Showing 1 changed file with 12 additions and 12 deletions.
diff --git a/main.py b/main.py
@@ -185,18 +185,18 @@ def create_config():
 
 
 def preprocessing(infile, config):
-    # validate.InputTester(infile, 'in').test_file()
-    # map_to_database.runner(
-    #     infile=infile,
-    #     db=config['GLOBAL']['db'],
-    #     is_ppi=config['PREPROCESS']['is_ppi'],
-    #     use_fr=config['PREPROCESS']['all_fract'],
-    # )
-    # hypothesis.runner(
-    #     infile=infile,
-    #     hypothesis=config['PREPROCESS']['merge'],
-    #     use_fr=config['PREPROCESS']['all_fract'],
-    # )
+    validate.InputTester(infile, 'in').test_file()
+    map_to_database.runner(
+        infile=infile,
+        db=config['GLOBAL']['db'],
+        is_ppi=config['PREPROCESS']['is_ppi'],
+        use_fr=config['PREPROCESS']['all_fract'],
+    )
+    hypothesis.runner(
+        infile=infile,
+        hypothesis=config['PREPROCESS']['merge'],
+        use_fr=config['PREPROCESS']['all_fract'],
+    )
     #  # sample specific folder
     tmp_folder = io.file2folder(infile, prefix=config['GLOBAL']['temp'])
     # merge.runner(base=tmp_folder, mergemode=config['PREPROCESS']['merge'])