n2kEvalSDM

This code is for modelling, projecting and evalutating species distribution models for 41 tree species. The code is written for use on a slurm HPC but should be runnable on a desktop machine. Change arguments according to the R script you want to run.

The orchestrateSpecies.sh is starting various R scripts for

• separating into spatial blocks (blockSeparation.r)
• modelling (modelling.r)
• predicting (prediction.r)
• evaluating for Natura 2000 areas (compare.r)

Spatial blocking

• uncomment blockSeparation.r in orchestrateSpecies.sh
• run bash orchestrateSpecies.sh in terminal

Modelling

• Change model accroding to the one you want to run in orchestrateSpecies.sh
• uncomment modelling.r
• run bash orchestrateSpecies.sh in terminal

Prediction

• uncomment prediction.r in orchestrateSpecies.sh
• run bash orchestrateSpecies.sh in terminal

Evaluating species dstribution changes for Natura 2000 sites

• uncomment compare.r in orchestrateSpecies.sh
• keep "ABC" or change to either or if you want to evaluate for only Birds (A) or Habitats Directive (B) or both (C) areas
• run bash orchestrateSpecies.sh in terminal

In all codes the paths are changed. So please chnage paths in all files according to your preferences.