TEMPORARILY avoid using CDC varpipe reference

aofarrel · Aug 23, 2024 · 19a2f85 · 19a2f85
1 parent 02e56ff
commit 19a2f85
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/myco_raw.wdl b/myco_raw.wdl
@@ -20,7 +20,7 @@ workflow myco {
 		Int     clean_average_q_score          = 29
 		Boolean clean_before_decontam          = true
 		Boolean covstatsQC_skip_entirely       = false
-		Boolean decontam_use_CDC_varpipe_ref   = true
+		Boolean decontam_use_CDC_varpipe_ref   = false
 		File?   mask_bedfile
 		Int     QC_max_pct_low_coverage_sites  =    20
 		Int     QC_max_pct_unmapped            =     2