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Update myco_raw.wdl
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aofarrel committed Nov 21, 2023
1 parent 1f4f475 commit 588e904
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion myco_raw.wdl
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Expand Up @@ -81,7 +81,7 @@ workflow myco {
scatter(paired_fastqs in paired_fastq_sets) {
call clckwrk_combonation.clean_and_decontam_and_check as decontam_each_sample {
input:
docker_image = if decontam_use_CDC_varpipe_ref then "ashedpotatoes/clockwork-plus:v0.11.3.7-CDC" else "ashedpotatoes/clockwork-plus:v0.11.3.2-full",
docker_image = if decontam_use_CDC_varpipe_ref then "ashedpotatoes/clockwork-plus:v0.11.3.9-CDC" else "ashedpotatoes/clockwork-plus:v0.11.3.9-full",
unsorted_sam = true,
reads_files = paired_fastqs,
subsample_cutoff = subsample_cutoff,
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