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27 Open 17 Closed
27 Open 17 Closed
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Issues list

in DEG.Rmd, write expression table only once enhancement New feature or request RNAseq
#63 opened Dec 20, 2024 by abartlett004
entrezid for enrichment analyses
#62 opened Dec 10, 2024 by eberdan
add methods to RNA QC and DE templates
#61 opened Nov 26, 2024 by lpantano
library links enhancement New feature or request
#60 opened Nov 18, 2024 by eberdan
metadata source for DE template bug Something isn't working
#58 opened Nov 14, 2024 by eberdan
1
DE for continuous variables enhancement New feature or request
#56 opened Nov 13, 2024 by eberdan
load metrics for non- mouse / human. bug Something isn't working
#55 opened Nov 12, 2024 by eberdan
1
RNA DE template question Further information is requested
#53 opened Nov 12, 2024 by eberdan
2
evaluate using chipseq qc template for cutandrun output enhancement New feature or request
#51 opened Oct 11, 2024 by abartlett004
test and potentially make templates for cell type annotation
#50 opened Sep 23, 2024 by abartlett004
Options for GRN with single cell enhancement New feature or request
#49 opened Sep 9, 2024 by lpantano
sc DE discussion enhancement New feature or request
#47 opened Aug 27, 2024 by lpantano
@lpantano
DEseq report discussion documentation Improvements or additions to documentation enhancement New feature or request RNAseq
#45 opened Aug 22, 2024 by lpantano
cutandrun report elements
#43 opened Aug 7, 2024 by abartlett004
@eberdan
3
DEG rdata annotation assumes human reference
#41 opened Jul 15, 2024 by epartan
1
add checks for low count genes?
#35 opened Jun 24, 2024 by eberdan
potentially use this package for more palette options enhancement New feature or request
#34 opened Jun 24, 2024 by lpantano
make sanitize_datatable into package function
#29 opened May 31, 2024 by abartlett004
check samplesheet function to ensure files exist enhancement New feature or request RNAseq
#27 opened May 28, 2024 by abartlett004
Common repository for lists of protein coding genes
#18 opened May 8, 2024 by lpantano
Common repository (dropbox?) for annotations to add to DE lists
#17 opened May 8, 2024 by lpantano
similar projects question Further information is requested
#13 opened Apr 26, 2024 by lpantano
Interactive volcano plot with glXYPlot enhancement New feature or request RNAseq
#12 opened Apr 25, 2024 by upendrabhattarai
Enrichment analysis flexibility enhancement New feature or request RNAseq
#11 opened Apr 25, 2024 by lpantano
DE - coefficient vs contrasts enhancement New feature or request RNAseq
#8 opened Apr 25, 2024 by lpantano
ProTip! Follow long discussions with comments:>50.