Remove numba from dependencies

bioinfodlsu · May 5, 2024 · c792008 · c792008
1 parent 9be03cc
commit c792008
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diff --git a/README.md b/README.md
@@ -257,7 +257,6 @@ Moreover, generating protein embeddings should ideally be done on a machine with
 | [`xgboost`](https://xgboost.readthedocs.io/en/stable/)           | Implements machine learning algorithms under the gradient boosting framework                                                                                                               | Apache License 2.0                                |
 | [`imbalanced-learn`](https://imbalanced-learn.org/stable/)       | Provides tools when dealing with classification with imbalanced classes                                                                                                                    | MIT License                                       |
 | [`joblib`](https://joblib.readthedocs.io/en/latest/)             | Provides tools for lightweight pipelining in Python                                                                                                                                        | BSD 3-Clause "New" or "Revised" License           |
-| [`numba`](https://numba.pydata.org/)                             | Translates Python functions to optimized machine code at runtime using the industry-standard LLVM compiler library                                                                         | BSD 2-Clause "Simplified" License                 |
 | [`cudatoolkit`](https://developer.nvidia.com/cuda-toolkit)       | Parallel computing platform and programming model for general computing on GPUs                                                                                                            | NVIDIA Software License                           |
 | [`bio_embeddings`](https://docs.bioembeddings.com/v0.2.3/)       | Provides an interface for the use of language model-based biological sequence representations for transfer-learning                                                                        | MIT License                                       |
 | [`torch`](https://pytorch.org/)                                  | Optimized tensor library for deep learning using GPUs and CPUs                                                                                                                             | BSD 3-Clause "New" or "Revised" License           |

diff --git a/environment_experiments.yaml b/environment_experiments.yaml
@@ -15,7 +15,6 @@ dependencies:
     - pyyaml=5.4.1
     - xgboost=1.7.6
     - joblib
-    - numba
     - matplotlib
     - jsonnet
     - pip
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@@ Expand Up / @@ -15,7 +15,6 @@ dependencies: @@
         - pyyaml=5.4.1
         - xgboost=1.7.6
         - joblib
-        - numba
         - matplotlib
         - jsonnet
         - pip
@@ Expand Down @@