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Various changes to get the new production host up and running #249

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merged 25 commits into from
Jul 20, 2022

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tlvu
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@tlvu tlvu commented Jun 30, 2022

Changes

Non-breaking changes

  • Bootstrap testsuite: only crawl the subset enough to pass canarie-api monitoring: faster when system under test has too much other stuff.
  • New script: check-autodeploy-repos: to ensure autodeploy will trigger normally.
  • New script: sync-data: to pull data from existing production host to a new production host or to a staging host to emulate the production host.
  • thredds, geoserver, generic_bird: set more appropriate production values, taken from Ouranosinc@316439e
  • monitoring: fix redundant network_mode: host and ports binding since host network_mode will already automatically perform port bindings

Breaking changes

  • None

Related Issue / Discussion

Fixes #212

@tlogan2000 @moulab88 FYI

tlvu added 16 commits February 17, 2022 11:14
…monitoring

Faster when test system has too much other stuff.
…ver to work

Pull is more flexible than push.  The production server is usually in a
DMZ without access to all the test/staging servers behind firewall.
Pull will allow all test/stagings servers to replicate data from the
production server.

Push was only working if another production server in the DMZ is
replicating data from the primary production server.  Push mode was not
working for the test/stagings servers.

After rsync, there are permissions to fix up.

We only have geoserver existing permission fix script so far.  We will
enable the other 2 once their permission fix script is created.
Required for RockyLinux8 but not Ubuntu, weird.

On Ubuntu, if can not shift, we have an error.
For `sync-data` to keep staging server up-to-date with production data.
Put assumption comment closer to code for better readability.
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/944/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-issues-found-with-new-deployment
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-137.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/772/

NOTEBOOK TEST RESULTS
    
[2022-06-30T21:52:08.403Z] ============================= test session starts ==============================
[2022-06-30T21:52:08.403Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-06-30T21:52:08.403Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-06-30T21:52:08.403Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-06-30T21:52:08.403Z] collected 246 items
[2022-06-30T21:52:08.403Z] 
[2022-06-30T21:52:13.334Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-06-30T21:52:52.842Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-06-30T21:53:04.141Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-06-30T21:53:09.461Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb .FFFFFFF       [ 13%]
[2022-06-30T21:53:12.041Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-06-30T21:55:35.330Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb .FF.....F.          [ 21%]
[2022-06-30T21:56:00.857Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-06-30T21:56:18.964Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-06-30T21:56:41.934Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-06-30T21:56:42.198Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-06-30T21:56:47.691Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-06-30T21:56:57.185Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-06-30T22:00:23.761Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-06-30T22:01:29.127Z] ..............                                                           [ 43%]
[2022-06-30T22:01:39.916Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-06-30T22:01:42.223Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-06-30T22:02:08.930Z] .................                                                        [ 54%]
[2022-06-30T22:02:17.009Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-06-30T22:02:18.396Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-06-30T22:02:28.363Z] .......FF.                                                               [ 61%]
[2022-06-30T22:02:39.745Z] finch-master/docs/source/notebooks/dap_subset.ipynb .........F           [ 65%]
[2022-06-30T22:02:49.478Z] finch-master/docs/source/notebooks/finch-usage.ipynb .F.FFF              [ 67%]
[2022-06-30T22:03:02.298Z] finch-master/docs/source/notebooks/subset.ipynb ..F.FF....FFFFF.....ss.  [ 77%]
[2022-06-30T22:03:03.787Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-06-30T22:03:08.292Z] ......                                                                   [ 80%]
[2022-06-30T22:03:40.384Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-06-30T22:04:03.698Z] .............                                                            [ 85%]
[2022-06-30T22:04:13.699Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-06-30T22:05:15.952Z] ....s.                                                                   [ 88%]
[2022-06-30T22:05:34.118Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-06-30T22:05:38.574Z] ...                                                                      [ 90%]
[2022-06-30T22:05:56.699Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-06-30T22:06:28.852Z] ......                                                                   [ 93%]
[2022-06-30T22:06:35.211Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-06-30T22:09:45.549Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-06-30T22:09:45.549Z] 
[2022-06-30T22:09:45.549Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/945/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-issues-found-with-new-deployment
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-137.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/773/

NOTEBOOK TEST RESULTS
    
[2022-07-06T00:24:30.649Z] ============================= test session starts ==============================
[2022-07-06T00:24:30.649Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-07-06T00:24:30.649Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-07-06T00:24:30.649Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-07-06T00:24:30.649Z] collected 246 items
[2022-07-06T00:24:30.649Z] 
[2022-07-06T00:24:37.696Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-07-06T00:25:43.274Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .FFFFF.        [  7%]
[2022-07-06T00:25:53.718Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-07-06T00:26:04.807Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-07-06T00:26:06.732Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-07-06T00:34:28.697Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb .FF.....F.          [ 21%]
[2022-07-06T00:34:50.481Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-07-06T00:35:05.384Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-07-06T00:35:28.097Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-07-06T00:35:28.933Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-07-06T00:35:34.381Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-07-06T00:35:43.156Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-07-06T00:38:23.007Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-07-06T00:39:17.479Z] ..............                                                           [ 43%]
[2022-07-06T00:39:26.061Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-07-06T00:39:28.285Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-07-06T00:39:52.534Z] .................                                                        [ 54%]
[2022-07-06T00:39:59.475Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-07-06T00:40:00.853Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-07-06T00:40:11.329Z] .......FF.                                                               [ 61%]
[2022-07-06T00:40:22.550Z] finch-master/docs/source/notebooks/dap_subset.ipynb .........F           [ 65%]
[2022-07-06T00:40:31.952Z] finch-master/docs/source/notebooks/finch-usage.ipynb .F.FFF              [ 67%]
[2022-07-06T00:40:43.543Z] finch-master/docs/source/notebooks/subset.ipynb ..F.FF....FFFFF.....ss.  [ 77%]
[2022-07-06T00:40:44.921Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-07-06T00:40:49.643Z] ......                                                                   [ 80%]
[2022-07-06T00:41:16.338Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-07-06T00:41:31.368Z] .............                                                            [ 85%]
[2022-07-06T00:41:39.478Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-07-06T00:44:04.480Z] ....s.                                                                   [ 88%]
[2022-07-06T00:44:16.694Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-07-06T00:44:22.781Z] ...                                                                      [ 90%]
[2022-07-06T00:44:37.754Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-07-06T00:45:08.341Z] ......                                                                   [ 93%]
[2022-07-06T00:45:13.883Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-07-06T00:48:33.686Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-07-06T00:48:33.686Z] 
[2022-07-06T00:48:33.686Z] =================================== FAILURES ===================================
    
  

…h port_bindings

This makes sense since "host" network_mode will already bind all ports
bindings to the host already so the specific port bindings is redundant.

docker-20.10.17, docker-compose-1.29.2.

```
ERROR: for node-exporter  "host" network_mode is incompatible with port_bindings                                          Traceback (most recent call last):
  File "docker-compose", line 3, in <module>
  File "compose/cli/main.py", line 81, in main
  File "compose/cli/main.py", line 203, in perform_command
  File "compose/metrics/decorator.py", line 18, in wrapper
  File "compose/cli/main.py", line 1186, in up
  File "compose/cli/main.py", line 1182, in up
  File "compose/project.py", line 702, in up
  File "compose/parallel.py", line 108, in parallel_execute
  File "compose/parallel.py", line 206, in producer
  File "compose/project.py", line 688, in do
  File "compose/service.py", line 564, in execute_convergence_plan
  File "compose/service.py", line 480, in _execute_convergence_create
  File "compose/parallel.py", line 108, in parallel_execute
  File "compose/parallel.py", line 206, in producer
  File "compose/service.py", line 478, in <lambda>
  File "compose/service.py", line 457, in create_and_start
  File "compose/service.py", line 334, in create_container
  File "compose/service.py", line 941, in _get_container_create_options
  File "compose/service.py", line 1073, in _get_container_host_config
  File "docker/api/container.py", line 598, in create_host_config
  File "docker/types/containers.py", line 339, in __init__
docker.errors.InvalidArgument: "host" network_mode is incompatible with port_bindings
```
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/946/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-issues-found-with-new-deployment
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-137.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/774/

NOTEBOOK TEST RESULTS
    
[2022-07-15T21:51:50.945Z] ============================= test session starts ==============================
[2022-07-15T21:51:50.945Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-07-15T21:51:50.945Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-07-15T21:51:50.945Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-07-15T21:51:50.945Z] collected 246 items
[2022-07-15T21:51:50.945Z] 
[2022-07-15T21:51:55.891Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-07-15T21:52:42.811Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-07-15T21:52:53.692Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-07-15T21:53:03.607Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-07-15T21:53:06.347Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-07-15T22:04:08.038Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb .FF.....F.          [ 21%]
[2022-07-15T22:04:23.611Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-07-15T22:06:15.081Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb F                 [ 23%]
[2022-07-15T22:06:43.872Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-07-15T22:06:44.135Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-07-15T22:06:49.478Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-07-15T22:07:00.022Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-07-15T22:10:25.523Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-07-15T22:11:14.003Z] ..............                                                           [ 43%]
[2022-07-15T22:11:23.137Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-07-15T22:11:25.352Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-07-15T22:11:51.345Z] .................                                                        [ 54%]
[2022-07-15T22:11:57.765Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-07-15T22:11:59.155Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-07-15T22:12:09.024Z] .......FF.                                                               [ 61%]
[2022-07-15T22:12:20.183Z] finch-master/docs/source/notebooks/dap_subset.ipynb .........F           [ 65%]
[2022-07-15T22:12:29.672Z] finch-master/docs/source/notebooks/finch-usage.ipynb .F.FFF              [ 67%]
[2022-07-15T22:12:42.413Z] finch-master/docs/source/notebooks/subset.ipynb ..F.FF....FFFFF.....ss.  [ 77%]
[2022-07-15T22:12:43.794Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-07-15T22:12:47.988Z] ......                                                                   [ 80%]
[2022-07-15T22:13:44.246Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-07-15T22:14:10.819Z] .............                                                            [ 85%]
[2022-07-15T22:14:20.803Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-07-15T22:15:28.755Z] ....s.                                                                   [ 88%]
[2022-07-15T22:15:43.653Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-07-15T22:15:46.684Z] ...                                                                      [ 90%]
[2022-07-15T22:16:04.780Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-07-15T22:16:33.107Z] ......                                                                   [ 93%]
[2022-07-15T22:16:37.829Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-07-15T22:19:47.817Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-07-15T22:19:47.818Z] 
[2022-07-15T22:19:47.818Z] =================================== FAILURES ===================================
    
  

@tlvu tlvu changed the title Various fixes to get the new production host up and running Various changes to get the new production host up and running Jul 18, 2022
@tlvu tlvu marked this pull request as ready for review July 18, 2022 13:28
@tlvu tlvu requested a review from matprov July 18, 2022 13:29
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/947/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-issues-found-with-new-deployment
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-137.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/775/

NOTEBOOK TEST RESULTS
    
[2022-07-18T13:22:24.061Z] ============================= test session starts ==============================
[2022-07-18T13:22:24.061Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-07-18T13:22:24.061Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-07-18T13:22:24.061Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-07-18T13:22:24.061Z] collected 246 items
[2022-07-18T13:22:24.061Z] 
[2022-07-18T13:22:32.707Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-07-18T13:23:18.055Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-07-18T13:23:26.061Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb .FFFF.         [  9%]
[2022-07-18T13:23:33.475Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb .FFFFFFF       [ 13%]
[2022-07-18T13:23:36.048Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-07-18T13:23:44.180Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb FFFFFFFFF.          [ 21%]
[2022-07-18T13:24:11.238Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-07-18T13:24:26.133Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb .                 [ 23%]
[2022-07-18T13:24:32.262Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb FFFFFF           [ 26%]
[2022-07-18T13:24:33.638Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-07-18T13:24:38.720Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-07-18T13:24:47.953Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-07-18T13:28:35.755Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ...FF.FF.FFF.FF [ 37%]
[2022-07-18T13:28:35.755Z] FFFFFF.FFFFFFF                                                           [ 43%]
[2022-07-18T13:28:38.643Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-07-18T13:28:40.810Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-07-18T13:28:46.517Z] ....FFFFFF.FFFFFF                                                        [ 54%]
[2022-07-18T13:28:53.435Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-07-18T13:28:54.811Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-07-18T13:29:06.557Z] .......FF.                                                               [ 61%]
[2022-07-18T13:29:18.855Z] finch-master/docs/source/notebooks/dap_subset.ipynb .........F           [ 65%]
[2022-07-18T13:29:28.118Z] finch-master/docs/source/notebooks/finch-usage.ipynb .F.FFF              [ 67%]
[2022-07-18T13:29:34.424Z] finch-master/docs/source/notebooks/subset.ipynb ..F.FFFFFFFFFFFFFFFFss.  [ 77%]
[2022-07-18T13:29:36.973Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb F [ 77%]
[2022-07-18T13:29:39.141Z] FFF.F.                                                                   [ 80%]
[2022-07-18T13:29:43.350Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb F [ 80%]
[2022-07-18T13:29:46.874Z] FFF.FF.FFFFF.                                                            [ 85%]
[2022-07-18T13:29:53.444Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb F [ 86%]
[2022-07-18T13:29:53.707Z] FFFFs.                                                                   [ 88%]
[2022-07-18T13:30:11.881Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-07-18T13:30:15.794Z] ...                                                                      [ 90%]
[2022-07-18T13:30:37.704Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-07-18T13:31:09.382Z] ......                                                                   [ 93%]
[2022-07-18T13:31:15.655Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-07-18T13:34:25.958Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-07-18T13:34:25.958Z] 
[2022-07-18T13:34:25.958Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/948/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-issues-found-with-new-deployment
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-137.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/776/

NOTEBOOK TEST RESULTS
    
[2022-07-18T13:58:39.873Z] ============================= test session starts ==============================
[2022-07-18T13:58:39.873Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-07-18T13:58:39.873Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-07-18T13:58:39.873Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-07-18T13:58:39.873Z] collected 246 items
[2022-07-18T13:58:39.873Z] 
[2022-07-18T13:58:49.703Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-07-18T13:59:03.067Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-07-18T13:59:07.241Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb .FFFF.         [  9%]
[2022-07-18T13:59:14.311Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-07-18T13:59:16.794Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-07-18T13:59:22.340Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb FFFFFFFFF.          [ 21%]
[2022-07-18T13:59:38.171Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-07-18T14:10:30.175Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb F                 [ 23%]
[2022-07-18T14:10:30.175Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb FFFFFF           [ 26%]
[2022-07-18T14:10:31.563Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-07-18T14:10:36.647Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-07-18T14:10:45.794Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-07-18T14:13:00.319Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ...FF.FF.FFF.FF [ 37%]
[2022-07-18T14:13:03.072Z] FFFFFF.FFFFFFF                                                           [ 43%]
[2022-07-18T14:13:09.989Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-07-18T14:13:11.934Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-07-18T14:13:18.088Z] ....FFFFFF.FFFFFF                                                        [ 54%]
[2022-07-18T14:13:24.227Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-07-18T14:13:25.601Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-07-18T14:13:36.325Z] .......FF.                                                               [ 61%]
[2022-07-18T14:13:47.773Z] finch-master/docs/source/notebooks/dap_subset.ipynb .........F           [ 65%]
[2022-07-18T14:13:57.176Z] finch-master/docs/source/notebooks/finch-usage.ipynb .F.FFF              [ 67%]
[2022-07-18T14:14:03.038Z] finch-master/docs/source/notebooks/subset.ipynb ..F.FFFFFFFFFFFFFFFFss.  [ 77%]
[2022-07-18T14:14:06.327Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb F [ 77%]
[2022-07-18T14:14:07.786Z] FFF.F.                                                                   [ 80%]
[2022-07-18T14:14:11.979Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb F [ 80%]
[2022-07-18T14:14:14.582Z] FFF.FF.FFFFF.                                                            [ 85%]
[2022-07-18T14:14:19.855Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb F [ 86%]
[2022-07-18T14:14:20.943Z] FFFFs.                                                                   [ 88%]
[2022-07-18T14:14:27.493Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-07-18T14:14:32.186Z] ...                                                                      [ 90%]
[2022-07-18T14:14:44.383Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-07-18T14:15:10.894Z] ......                                                                   [ 93%]
[2022-07-18T14:15:19.027Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-07-18T14:15:22.359Z] notebooks/stress-tests.ipynb EEEEE                                       [100%]
[2022-07-18T14:15:22.359Z] 
[2022-07-18T14:15:22.359Z] ==================================== ERRORS ====================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/949/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-issues-found-with-new-deployment
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-137.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/777/

NOTEBOOK TEST RESULTS
    
[2022-07-18T23:30:22.383Z] ============================= test session starts ==============================
[2022-07-18T23:30:22.383Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-07-18T23:30:22.383Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-07-18T23:30:22.383Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-07-18T23:30:22.383Z] collected 246 items
[2022-07-18T23:30:22.383Z] 
[2022-07-18T23:30:30.814Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-07-18T23:31:01.605Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-07-18T23:31:10.602Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-07-18T23:31:20.051Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-07-18T23:31:22.518Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-07-18T23:32:36.126Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb .FF.....F.          [ 21%]
[2022-07-18T23:32:50.331Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-07-18T23:34:41.803Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb F                 [ 23%]
[2022-07-18T23:34:59.774Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-07-18T23:35:00.715Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-07-18T23:35:06.235Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-07-18T23:35:16.467Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-07-18T23:38:39.229Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-07-18T23:39:43.169Z] ..............                                                           [ 43%]
[2022-07-18T23:39:51.005Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-07-18T23:39:54.118Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-07-18T23:40:05.286Z] .................                                                        [ 54%]
[2022-07-18T23:40:11.963Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-07-18T23:40:13.338Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-07-18T23:40:23.443Z] .......FF.                                                               [ 61%]
[2022-07-18T23:40:34.856Z] finch-master/docs/source/notebooks/dap_subset.ipynb .........F           [ 65%]
[2022-07-18T23:40:44.239Z] finch-master/docs/source/notebooks/finch-usage.ipynb .F.FFF              [ 67%]
[2022-07-18T23:40:55.843Z] finch-master/docs/source/notebooks/subset.ipynb ..F.FF....FFFFF.....ss.  [ 77%]
[2022-07-18T23:40:57.214Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-07-18T23:40:59.745Z] ......                                                                   [ 80%]
[2022-07-18T23:41:14.633Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-07-18T23:41:26.689Z] .............                                                            [ 85%]
[2022-07-18T23:41:33.267Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-07-18T23:42:08.263Z] ....s.                                                                   [ 88%]
[2022-07-18T23:42:18.284Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-07-18T23:42:23.677Z] ...                                                                      [ 90%]
[2022-07-18T23:42:35.901Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-07-18T23:43:15.577Z] ......                                                                   [ 93%]
[2022-07-18T23:43:28.079Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-07-18T23:46:47.302Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-07-18T23:46:47.302Z] 
[2022-07-18T23:46:47.302Z] =================================== FAILURES ===================================
    
  

CHANGES.md Outdated
- Various changes to get the new production host up and running

**Non-breaking changes**
- Boostrap testsuite: only crawl the subset enough to pass canarie-api monitoring: faster when system under test has too much other stuff.
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Boostrap in here seems more to be a kind of music than a stack deployment concept ;)

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I meant "bootstrap" LOL, typo :D

@@ -97,5 +97,6 @@ LATEST_COMPOSE_VERSION="`git ls-remote https://github.com/docker/compose | grep
# LATEST_COMPOSE_VERSION=$(curl --silent https://api.github.com/repos/docker/compose/releases/latest | jq .name -r) # need jq :(
sudo curl -L "https://github.com/docker/compose/releases/download/$LATEST_COMPOSE_VERSION/docker-compose-$(uname -s)-$(uname -m)" -o /usr/local/bin/docker-compose
sudo chmod +x /usr/local/bin/docker-compose
sudo curl -L "https://raw.githubusercontent.com/docker/compose/${LATEST_COMPOSE_VERSION}/contrib/completion/bash/docker-compose" -o /etc/bash_completion.d/docker-compose
# docker-compose v2 removed the completion file, see https://github.com/docker/compose/issues/8550
#sudo curl -L "https://raw.githubusercontent.com/docker/compose/${LATEST_COMPOSE_VERSION}/contrib/completion/bash/docker-compose" -o /etc/bash_completion.d/docker-compose
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Is there a value in keeping this comment here?

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I was half-half on this one. That line will work for docker-compose v1. Given issue #246, we could potentially use v1 for a bit longer.

@github-actions github-actions bot added ci/operations Continuous Integration components documentation Improvements or additions to documentation labels Jul 20, 2022
@tlvu tlvu merged commit 12417f1 into master Jul 20, 2022
@tlvu tlvu deleted the fix-issues-found-with-new-deployment branch July 20, 2022 01:04
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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/950/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-issues-found-with-new-deployment
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://host-140-137.rdext.crim.ca

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL : http://daccs-jenkins.crim.ca:80/job/PAVICS-e2e-workflow-tests/job/master/778/

NOTEBOOK TEST RESULTS
    
[2022-07-20T01:02:51.374Z] ============================= test session starts ==============================
[2022-07-20T01:02:51.374Z] platform linux -- Python 3.8.13, pytest-7.1.2, pluggy-1.0.0
[2022-07-20T01:02:51.374Z] rootdir: /home/jenkins/agent/workspace/PAVICS-e2e-workflow-tests_master
[2022-07-20T01:02:51.374Z] plugins: anyio-3.5.0, dash-2.3.1, nbval-0.9.6, tornasync-0.6.0.post2
[2022-07-20T01:02:51.374Z] collected 246 items
[2022-07-20T01:02:51.374Z] 
[2022-07-20T01:02:57.682Z] notebooks-auth/test_thredds.ipynb ...........                            [  4%]
[2022-07-20T01:03:44.940Z] pavics-sdi-master/docs/source/notebooks/WCS_example.ipynb .......        [  7%]
[2022-07-20T01:03:55.635Z] pavics-sdi-master/docs/source/notebooks/WFS_example.ipynb ......         [  9%]
[2022-07-20T01:04:04.843Z] pavics-sdi-master/docs/source/notebooks/WMS_example.ipynb ........       [ 13%]
[2022-07-20T01:04:07.517Z] pavics-sdi-master/docs/source/notebooks/WPS_example.ipynb ..........     [ 17%]
[2022-07-20T01:05:12.282Z] pavics-sdi-master/docs/source/notebooks/climex.ipynb .FF.....F.          [ 21%]
[2022-07-20T01:05:36.079Z] pavics-sdi-master/docs/source/notebooks/eccc_geoapi.ipynb .....          [ 23%]
[2022-07-20T01:07:27.560Z] pavics-sdi-master/docs/source/notebooks/esgf-dap.ipynb F                 [ 23%]
[2022-07-20T01:07:42.891Z] pavics-sdi-master/docs/source/notebooks/forecasts.ipynb ......           [ 26%]
[2022-07-20T01:07:44.273Z] pavics-sdi-master/docs/source/notebooks/jupyter_extensions.ipynb .       [ 26%]
[2022-07-20T01:07:49.593Z] pavics-sdi-master/docs/source/notebooks/opendap.ipynb .......            [ 29%]
[2022-07-20T01:07:59.817Z] pavics-sdi-master/docs/source/notebooks/pavics_thredds.ipynb .....       [ 31%]
[2022-07-20T01:11:39.754Z] pavics-sdi-master/docs/source/notebooks/regridding.ipynb ............... [ 37%]
[2022-07-20T01:12:39.329Z] ..............                                                           [ 43%]
[2022-07-20T01:12:52.196Z] pavics-sdi-master/docs/source/notebooks/rendering.ipynb ....             [ 44%]
[2022-07-20T01:12:54.421Z] pavics-sdi-master/docs/source/notebooks/subset-user-input.ipynb ........ [ 47%]
[2022-07-20T01:13:06.230Z] .................                                                        [ 54%]
[2022-07-20T01:13:12.650Z] pavics-sdi-master/docs/source/notebooks/subsetting.ipynb .....           [ 56%]
[2022-07-20T01:13:14.036Z] pavics-sdi-master/docs/source/notebook-components/weaver_example.ipynb . [ 57%]
[2022-07-20T01:13:30.719Z] .......FF.                                                               [ 61%]
[2022-07-20T01:13:41.795Z] finch-master/docs/source/notebooks/dap_subset.ipynb .........F           [ 65%]
[2022-07-20T01:13:51.490Z] finch-master/docs/source/notebooks/finch-usage.ipynb .F.FFF              [ 67%]
[2022-07-20T01:14:15.880Z] finch-master/docs/source/notebooks/subset.ipynb ....................ss.  [ 77%]
[2022-07-20T01:14:17.262Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-1DataAccess.ipynb . [ 77%]
[2022-07-20T01:14:20.053Z] ......                                                                   [ 80%]
[2022-07-20T01:14:32.256Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-2Subsetting.ipynb . [ 80%]
[2022-07-20T01:14:41.331Z] .............                                                            [ 85%]
[2022-07-20T01:14:49.444Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-3Climate-Indicators.ipynb . [ 86%]
[2022-07-20T01:15:21.091Z] ....s.                                                                   [ 88%]
[2022-07-20T01:15:33.304Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-4Ensembles.ipynb . [ 89%]
[2022-07-20T01:15:38.892Z] ...                                                                      [ 90%]
[2022-07-20T01:15:53.772Z] PAVICS-landing-master/content/notebooks/climate_indicators/PAVICStutorial_ClimateDataAnalysis-5Visualization.ipynb . [ 90%]
[2022-07-20T01:16:28.510Z] ......                                                                   [ 93%]
[2022-07-20T01:16:37.828Z] notebooks/hummingbird.ipynb ............                                 [ 97%]
[2022-07-20T01:20:02.772Z] notebooks/stress-tests.ipynb .....                                       [100%]
[2022-07-20T01:20:02.772Z] 
[2022-07-20T01:20:02.772Z] =================================== FAILURES ===================================
    
  

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E2E Test Results

DACCS-iac Pipeline Results

Build URL : http://daccs-jenkins.crim.ca:80/job/DACCS-iac-birdhouse/951/
Result : failure

BIRDHOUSE_DEPLOY_BRANCH : fix-issues-found-with-new-deployment
DACCS_CONFIGS_BRANCH : master
PAVICS_E2E_WORKFLOW_TESTS_BRANCH : master
PAVICS_SDI_BRANCH : master

DESTROY_INFRA_ON_EXIT : true
PAVICS_HOST : https://

PAVICS-e2e-workflow-tests Pipeline Results

Tests URL :

NOTEBOOK TEST RESULTS
    
</code>

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Productize Notos: actual go-live
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