tests: add example test

.github/workflows/cicd.yml

@@ -59,7 +59,7 @@ jobs:
         uses: ./actions/py/pytest
         with:
           python-version: ${{ matrix.python-version }}
-          unit-test-directory: ./
+          unit-test-directory: tests/
 
   publish-py-package:
     needs:

.gitignore

@@ -160,3 +160,4 @@ cython_debug/
 #  and can be added to the global gitignore or merged into this file.  For a more nuclear
 #  option (not recommended) you can uncomment the following to ignore the entire idea folder.
 .idea/
+.python-version

config.yml

@@ -5,9 +5,9 @@
 # Accordingly, the packages are installed using the kernel type, e.g., packages_pyodide.
 # The default packages are installed for all the notebooks.
 default:
-  packages_common:
-  packages_python:
-  packages_pyodide:
+  packages_common: []
+  packages_python: []
+  packages_pyodide: []
 notebooks:
   - name: validate_data.ipynb
     packages_common:

pyproject.toml

@@ -20,7 +20,7 @@ dependencies = [
     # "pydantic", # included in mat3ra-esse[dev]
     # "jsonschema",
     # specific requirements
-    "mat3ra-utils[jupyter]",
+    "mat3ra-utils[jupyterlite]",
 ]
 
 [project.optional-dependencies]
@@ -36,6 +36,7 @@ tests = [
     "pytest",
     "pytest-cov",
     "pytest-mock",
+    "pytest-asyncio",
 ]
 all = ["camsai-notebooks[tests]"]
 
@@ -55,7 +56,11 @@ build-backend = "setuptools.build_meta"
 git_describe_command = "git describe --tags --long"
 
 [tool.setuptools.packages.find]
-where = ["utils"]
+where = ["src"]
+
+[tool.setuptools.package-data]
+src = ["config.yml"]
+
 
 [tool.black]
 line-length = 120
@@ -74,7 +79,7 @@ extend-exclude = [
     "src/js"
 ]
 line-length = 120
-target-version = "py38"
+target-version = "py310"
 
 [tool.ruff.per-file-ignores]
 "__init__.py" = ["F401"]
@@ -83,3 +88,7 @@ target-version = "py38"
 profile = "black"
 multi_line_output = 3
 include_trailing_comma = true
+
+# to avoid `warnings.warn(PytestDeprecationWarning(_DEFAULT_FIXTURE_LOOP_SCOPE_UNSET))`
+[tool.pytest.ini_options]
+asyncio_default_fixture_loop_scope = "function"

src/camsai/notebooks/utils/__init__.py

@@ -0,0 +1 @@
+from mat3ra.utils.jupyterlite.packages import install_packages

tests/test_install_packages.py

@@ -0,0 +1,7 @@
+import pytest
+from camsai.notebooks.utils import install_packages
+
+@pytest.mark.asyncio
+async def test_install_packages():
+    await install_packages("validate_data.ipynb", "./config.yml")
+    assert True