Assorted fixes #271
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| name: Test | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| jobs: | |
| test: | |
| name: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - ubuntu-22.04 | |
| - macos-13 | |
| runs-on: ${{ matrix.os }} | |
| steps: | |
| - name: Install Ubuntu dependencies | |
| if: matrix.os == 'ubuntu-22.04' | |
| run: | | |
| sudo apt-get update | |
| sudo apt install -y binutils-gold libbsd-dev clang-15 libclang-15-dev libclang-cpp15-dev llvm-15 llvm-15-dev libelf-dev libgmp-dev libncurses-dev libunwind-dev ninja-build sbcl zlib1g-dev libnetcdf-dev libexpat1-dev libfmt-dev libboost-all-dev | |
| - name: Install MacOS dependencies | |
| if: matrix.os == 'macos-13' | |
| run: | | |
| brew install boost fmt gmp llvm ninja pkg-config sbcl ecl netcdf zeromq | |
| - name: Checkout clasp | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: clasp-developers/clasp | |
| ref: main | |
| - name: Checkout cando | |
| uses: actions/checkout@v4 | |
| with: | |
| path: extensions/cando | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| - name: Install AmberTools | |
| run: | | |
| conda install -c conda-forge ambertools | |
| - name: Build Cando (koga/Ubuntu) | |
| if: matrix.os == 'ubuntu-22.04' | |
| run: | | |
| ./koga --extensions=cando,seqan-clasp --skip-sync=cando | |
| - name: Build Cando (koga/MacOS) | |
| if: matrix.os == 'macos-13' | |
| run: | | |
| ./koga --extensions=cando,seqan-clasp --skip-sync=cando | |
| - name: Build Clasp (ninja) | |
| run: | | |
| ninja -C build | |
| - name: Run regression tests | |
| run: | | |
| ninja -C build test | |
| - name: Run Cando regression tests | |
| run: | | |
| ninja -C build cando-test |