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17 Open 62 Closed
17 Open 62 Closed
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Issues list

GFF.parse modifies input order of base_dict
#144 opened Mar 28, 2024 by percyfal
Warning in GFFParser: BiopythonDeprecationWarning: UnknownSeq(length) is deprecated; please use Seq(None, length) instead.
#143 opened Jan 29, 2024 by victorlin
Error in GFFParser: AttributeError: module 'Bio.SeqFeature' has no attribute 'SimpleLocation'
#142 opened Jan 29, 2024 by victorlin
Error in GFFParser: UnknownSeq is deprecated in biopython 1.81
#136 opened Feb 13, 2023 by Kmassau
7
glimmergff_to_proteins.py / Alternative Codon Table
#132 opened Sep 18, 2020 by zeyak
glimmergff_to_proteins.py / Reordering Fasta file
#131 opened Sep 18, 2020 by zeyak
IndexError with NCBI gff
#128 opened Dec 5, 2019 by MrTomRod
Did not find remapped ID location:
#118 opened Jul 10, 2018 by fbeghini
2
ValueError: need more than 0 values to unpack
#115 opened Mar 15, 2018 by zhengboying
1
Regarding gff2_to_gff3.py script
#111 opened Sep 21, 2016 by jeffinrockey
GFF3 parent / id remapping issue.
#109 opened May 26, 2016 by hexylena
2
Missing features in GFF3 data
#108 opened Feb 9, 2016 by thobalose
Declare dependency on biopython
#105 opened Dec 9, 2015 by detrout
write Dbxref instead of db_xref when converting genbank to GFF3
#102 opened Oct 26, 2015 by timflutre
4
GFF module can write unreadable GFF3 sequences.
#99 opened May 29, 2015 by hexylena
1
CDS entries in GFF3 file are not merged to a CompoundLocation
#95 opened Jan 14, 2015 by mikdur
5
over url-encoding in attribute fields
#86 opened Apr 18, 2014 by bobbyo
5
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