Skip to content

Convert GFF file to GenBank file format while extracting the sequences between the annotated regions

Notifications You must be signed in to change notification settings

chundruv/GFF-to-GenBank

Folders and files

NameName
Last commit message
Last commit date

Latest commit

 

History

9 Commits
 
 
 
 

Repository files navigation

GFF-to-GenBank

Convert GFF file to GenBank file format while extracting the sequences between the annotated regions

Original script written by Brad Chapman and Hsiao Yi - https://github.com/chapmanb/bcbb/blob/master/gff/Scripts/gff/gff_to_genbank.py

Edited by Kartik Chundru to crop the FASTA sequence between the first and last annotated regions.

Usage: gff_to_genbank_edit.py <GFF annotation file> <FASTA sequence file>

Requires:

About

Convert GFF file to GenBank file format while extracting the sequences between the annotated regions

Resources

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published

Languages