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Using installed package to test.
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dereckmezquita committed Jul 14, 2024
1 parent d73b514 commit 11a2b85
Showing 1 changed file with 3 additions and 7 deletions.
10 changes: 3 additions & 7 deletions dev/pca/pca-comparison.R
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box::use(dt = data.table)
box::use(./R/Comparisons[ Comparison ])
box::use(./R/Pca[ Pca ])
box::use(dmplot[ Pca, Comparison ])
data(feature_counts, package = "dmplot")

data <- dt$fread("dev/data/feature-counts-genes.csv")

# config <- R$parse_comparisons("./dev-data/comparisons.xlsx")

data <- data[GeneBiotype == "protein_coding", ]
data <- feature_counts[GeneBiotype == "protein_coding", ]

colnames(data)[1] <- "feature"

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