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1. AmberMdPrep AmberMdPrep Public

   Wrapper script for preparing explicitly solvated systems for molecular dynamics simulations with Amber.

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2. CreateRemdDirs CreateRemdDirs Public

   Automatically generate input for running M-REMD simulations (and more) in Amber.

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3. pytraj pytraj Public

   Forked from Amber-MD/pytraj

   Python API for cpptraj: a data analysis package for biomolecular simulation

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4. cpptraj cpptraj Public

   Forked from Amber-MD/cpptraj

   Biomolecular simulation trajectory/data analysis.

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5. Solvate.sh Solvate.sh Public

   Wrapper script for 'tleap' to solvate a system with specific number of water molecules.

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6. ParmEd ParmEd Public

   Forked from ParmEd/ParmEd

   Parameter/topology editor and molecular simulator

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