IDMP-744 - eliminated redundant restriction; removed pharmaceutical p… #1237
Workflow file for this run
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| # This workflow will run spellchecking for IDMP project | |
| name: IDMP Spellcheck Test | |
| on: | |
| push: | |
| pull_request: | |
| branches: ["master"] | |
| permissions: | |
| contents: read | |
| jobs: | |
| spellcheck: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.10" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install -r etc/testing/spelling/requirements.txt | |
| - name: Install robot | |
| run: | | |
| sudo wget --no-verbose -m -nH -nd -P /usr/bin https://raw.githubusercontent.com/ontodev/robot/master/bin/robot | |
| sudo wget --no-verbose -m -nH -nd -P /usr/bin https://github.com/ontodev/robot/releases/latest/download/robot.jar | |
| sudo chmod +x /usr/bin/robot | |
| - name: Merge all IDMP ontologies with robot | |
| run: | | |
| robot merge --input AboutIDMPDev-ReferenceIndividuals.rdf --output AboutIDMPDev-ReferenceIndividuals.ttl --catalog /home/runner/work/idmp/idmp/catalog-v001.xml | |
| - name: Run spellchecker | |
| run: | | |
| python etc/testing/spelling/onto_spellchecker.py --ontology /home/runner/work/idmp/idmp/AboutIDMPDev-ReferenceIndividuals.ttl --spell etc/testing/spelling/domain_specific_spellings.json --filter spec.pistoiaalliance.org | |
| if [ $? != 0 ]; | |
| then | |
| exit $? | |
| fi | |
| - name: Archive logfile | |
| uses: actions/upload-artifact@v4 | |
| if: always() | |
| with: | |
| name: logifle | |
| path: spellcheck_log.log |