Merge pull request #471 from edmcouncil/unit_test_extension_for_gsrs

Unit test extension for gsrs
edmcouncil · Sep 22, 2023 · be9729b · be9729b
2 parents 7fdf67a + 68a5c72
commit be9729b
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Showing 4 changed files with 57 additions and 1 deletion.
diff --git a/etc/unit_tests/UnitTestRunner.java b/etc/unit_tests/UnitTestRunner.java
@@ -152,10 +152,14 @@ private static boolean isResultExpected(String actual, String expected) {
             JsonNode expectedJson = objectMapper.readTree(expected);
 
             JsonNode diff = JsonDiff.asJson(actualJson, expectedJson);
-
+            
             if (diff.size() > 0) {
                 System.out.println("Differences found:");
                 System.out.println(diff);
+                System.out.println("Actual results:");
+                System.out.println(actualJson);
+                System.out.println("Expected results:");
+                System.out.println(expectedJson);
                 return false;
             }
         } catch (IOException e) {

diff --git a/etc/unit_tests/configs/gsrs_tests_config.yaml b/etc/unit_tests/configs/gsrs_tests_config.yaml
@@ -3,3 +3,16 @@ uc1_cq1_tests:
   parameters:
     uc1_cq1_parameter_1: "<https://gsrs.ncats.nih.gov/api/v1/substances/1J444QC288>"
   expected_output: "cq_expected_results/GSRS/uc1_cq1_expected_results.json"
+
+uc1_cq2_tests:
+  sparql_template: "cq_templates/uc1_cq2.sparql"
+  parameters:
+    uc1_cq2_parameter_1: "<https://gsrs.ncats.nih.gov/api/v1/substances/V912825CB9>"
+  expected_output: "cq_expected_results/GSRS/uc1_cq2_expected_results.json"
+
+uc1_cq4_tests:
+  sparql_template: "cq_templates/uc1_cq4.sparql"
+  parameters:
+    uc1_cq4_parameter_1: "<https://gsrs.ncats.nih.gov/api/v1/substances/1J444QC288>"
+    uc1_cq4_parameter_2: "<https://spec.pistoiaalliance.org/idmp/ontology/ISO/ISO11238-RegistrationAuthorities/GlobalSubstanceRegistrationSystem>"
+  expected_output: "cq_expected_results/GSRS/uc1_cq4_expected_results.json"
diff --git a/etc/unit_tests/cq_expected_results/GSRS/uc1_cq2_expected_results.json b/etc/unit_tests/cq_expected_results/GSRS/uc1_cq2_expected_results.json
@@ -0,0 +1,22 @@
+{
+    "results": {
+        "bindings": [
+            {
+                "ActiveMoiety": {
+                    "type": "uri",
+                    "value": "https://gsrs.ncats.nih.gov/api/v1/substances/1J444QC288"
+                },
+                "ActiveMoietyName": {
+                    "type": "literal",
+                    "value": "AMLODIPINE"
+                }
+            }
+        ]
+    },
+    "head": {
+        "vars": [
+            "ActiveMoiety",
+            "ActiveMoietyName"
+        ]
+    }
+}
diff --git a/etc/unit_tests/cq_expected_results/GSRS/uc1_cq4_expected_results.json b/etc/unit_tests/cq_expected_results/GSRS/uc1_cq4_expected_results.json
@@ -0,0 +1,17 @@
+{ "head": {
+    "vars": [ "Code" , "CodeName" , "CodeText" ]
+  } ,
+  "results": {
+    "bindings": [
+      { 
+        "Code": { "type": "uri" , "value": "https://spec.pistoiaalliance.org/idmp/ontology/EXT/Examples/AmlodipineExample/UNII-1J444QC288" } ,
+        "CodeName": { "type": "literal" , "value": "1J444QC288" } ,
+        "CodeText": { "type": "literal" , "value": "1J444QC288" }
+      },
+      { 
+        "Code": { "type": "uri" , "value": "https://data.pistoiaalliance.org/id/FDA_UNII/1J444QC288" } ,
+        "CodeText": { "type": "literal" , "value": "1J444QC288" }
+      }
+    ]
+  }
+}