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24 Open 28 Closed
24 Open 28 Closed
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Issues list

Representation of QC samples and associated runs in ISA and their deposition to Metabolights
#95 opened Dec 3, 2024 by proccaserra
@proccaserra
ENA run accession is not being dumped back into the ISA-JSON datafile comment field
#94 opened Dec 3, 2024 by bedroesb
@kdp-cloud
Perform an actual multi-omic submission mars-cli
#92 opened Nov 21, 2024 by kdp-cloud
7 tasks
@kdp-cloud
Update BioSamples entry with external references mars-cli
#91 opened Nov 19, 2024 by bedroesb
@kdp-cloud
BioSamples submission is not submitting any metadata repository API service
#90 opened Nov 19, 2024 by bedroesb
Create a MARS logo
#86 opened Nov 8, 2024 by bedroesb
2
Update main Readme and diagram documentation Improvements or additions to documentation
#85 opened Nov 8, 2024 by bedroesb
2 tasks
Clean up test-data and make sure all provided ISA-JSONs work
#84 opened Nov 8, 2024 by bedroesb
Alias in ISA-JSON is not the same as the one submitted to ENA mars-cli
#83 opened Nov 8, 2024 by bedroesb
Make password file support multiple password pairs mars-cli
#82 opened Nov 8, 2024 by bedroesb
1
@kdp-cloud
Do we want to let Samples inherit Source material info to comply with the ENA minimal checklist? (collection date and geografical location) repository API service
#81 opened Nov 8, 2024 by bedroesb
ISA Investigation is being submitted as a ENA Study/Project repository API service
#80 opened Nov 8, 2024 by bedroesb
4
ENA Study accession is being dumped in the ISA Study - maybe better in the assay? mars-cli repository API service
#79 opened Nov 8, 2024 by bedroesb
1
assays > processSequence > parameterValues are not being parsed by the ENA endpoint repository API service
#73 opened Nov 7, 2024 by bedroesb
@dipayan1985
Settle on accepted protocols / repository repository API service
#55 opened Nov 3, 2024 by bedroesb
1
Implementation of JSONata for secondary validation enhancement New feature or request mars-cli
#51 opened Oct 10, 2024 by kdp-cloud
1
Make sure the ENA ISA JSON repository API accepts our test ISA JSON repository API service
#48 opened Sep 10, 2024 by bedroesb
1 of 2 tasks
Take away BioHackathon mentions in code of BioSamples and ENA repository API service
#45 opened Aug 21, 2024 by bedroesb
BioSamples Repository services only accept ontology annotations.
#40 opened Jul 10, 2024 by xiaoranzhou
ISA RO-crate support enhancement New feature or request
#39 opened Jun 19, 2024 by kdp-cloud
Metadata validation prior to actual submission enhancement New feature or request mars-cli
#36 opened Jun 4, 2024 by kdp-cloud
Add healthcheck endpoint to repository API spec repository API service
#34 opened Apr 26, 2024 by apriltuesday
Filter ISA JSON mars-cli
#16 opened Apr 4, 2024 by bedroesb
@kdp-cloud
2
Include extra metadata for target repositories
#3 opened Feb 14, 2024 by kdp-cloud
1
ProTip! What’s not been updated in a month: updated:<2024-11-29.