Syncopy v2022.08

New Features

• Added down- and resampling algorithms for the new meta-function resampledata
• Added FOOOF method as a post-processing option for the freqanalysis method mtmfft.
• Added load_tdt to import data from the TDT system, thanks to @kajal5888
• Added .info attribute for all data classes to store auxiliary meta information
• Added zscore normalization to preprocessing
• new global spy.copy() function which copies entire Syncopy objects on disk

Changes

• the out.cfg attached to an analysis result now allows to replay all analysis methods
• connectivityanalysis now has FT compliant output support for the coherence
• spy.cleanup now has exposed interactive parameter
• removed keyword deep from copy(), all our copies are in fact deep
• demeaning after tapering for granger analysis
• detrending is now possible without filtering in preprocessing

Fixes

• out.cfg global side-effects (sorry again @kajal5888)
• CrossSpectralData plotting
• mixing of explicit keywords and cfg to control analysis
• fixed error on initializing SpikeData with empty ndarray (#257)

Detailed contributions and changes

• FIX: nwb event dimord by @KatharineShapcott in #282
• CHG: Capture explicit default settings if also in cfg by @tensionhead in #284
• Add Resampling by @tensionhead in #289
• Frontend Plotting tests by @tensionhead in #293
• CHG: FT compatibility for coherence outputs by @tensionhead in #294
• 297 providing the user an option for non interactive cleanup by @tensionhead in #298
• 291 show select by @tensionhead in #301
• 140 sub remove hdr memmap by @dfsp-spirit in #302
• 209 cfg by @tensionhead in #305
• 290 resampling tests by @tensionhead in #309
• 140 multiple outputs by @dfsp-spirit in #311
• CHG: Rework copy by @tensionhead in #312
• Dev by @tensionhead in #314
• 224 fooof implementation by @dfsp-spirit in #307
• 308 fooof docs by @dfsp-spirit in #316
• FIX: prevent error on init of SpikeData with empty ndarray by @dfsp-spirit in #317
• 303 auxiliary meta info container by @tensionhead in #315
• 318 migrate build system to poetry by @tensionhead in #319
• Fix tox win by @tensionhead in #323
• Dev updates for (pre-)release by @tensionhead in #324
• Tdt reader by @kajal5888 in #275
• 325 upgrade preprocessing by @tensionhead in #326
• NEW: Added start_sample as .info key by @KatharineShapcott in #327
• Dev by @tensionhead in #330
• Resampling doc by @tensionhead in #329
• Dev by @tensionhead in #333

New Contributors

• @dfsp-spirit made their first contribution in #302
• @kajal5888 made their first contribution in #275