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Things to Do
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Add a syntax to allow comments that can be stripped before passing the output to the parser
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write a routine (that would be separate from MultiMarkdown) to download linked images, save them to a tmp directory, and then convert them for use within a pdf.
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Decide on appropriate management of alignment when a cell spans multiple columns. Currently, the alignment of the first cell is used. (If Markdown goes to a whitespace-based alignment option, that could be used in this instance.)
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Consider whether there is a reasonable syntax for table cells that span multiple rows.
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Consider a syntax for superscripts (this has been discussed before) - could convert it to MathML syntax? Or just use math markup instead as described in [Superscripts].
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Certain markup gets processed within headers and shouldn't, e.g.
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Consider whether to incorporate the definition list syntax into a footnote to specify a glossary entry (or perhaps even without the footnote), or whether to leave well enough alone.