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11 Open 16 Closed
11 Open 16 Closed
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Issues list

Check out new approach for reference genome selection and alignment enhancement New feature or request
#28 opened Oct 7, 2024 by jonbra
@jonbra
Set fixed model for IQTREE and ROV enhancement New feature or request
#27 opened Sep 24, 2024 by jonbra
@jonbra
Consider using a when block for minor mapping enhancement New feature or request
#26 opened Sep 13, 2024 by jonbra
@jonbra
Consider creating nf-core module for Tanoti enhancement New feature or request
#24 opened May 29, 2024 by jonbra
1
Consider removing optical duplicates in the reads enhancement New feature or request
#21 opened May 14, 2024 by jonbra
@jonbra
Use IRMA to generate consensus sequence for HBV enhancement New feature or request
#19 opened Mar 14, 2024 by jonbra
@jonbra
Change parsefirstmapping module from read pairs to reads enhancement New feature or request
#18 opened Mar 5, 2024 by jonbra
Use kmer-signatures to identify closest reference? enhancement New feature or request
#12 opened Jan 22, 2024 by jonbra
Is Blastn run only once? Is the output from makeblastdb a queue channel and not a value channel? bug Something isn't working
#10 opened Jan 10, 2024 by jonbra
Use de novo scaffold blast to determine how many, and which, strains are in the sample enhancement New feature or request
#7 opened Dec 14, 2023 by jonbra
1
Phylogenetic analysis of scaffolds for genotyping enhancement New feature or request
#2 opened Nov 28, 2023 by jonbra
@jonbra
1
ProTip! Follow long discussions with comments:>50.