Preparing for open version of GACODE

html/src/README.rst

@@ -0,0 +1,23 @@
+Using GACODE
+============
+
+GACODE is free software released under the Apache 2.0 license. The developers of GACODE recommend the following **best practices**
+
+1. Compile/use the Software source code AS IS for publication purposes. You are welcome and encouraged to request changes through the `github issues system <https://github.com/gafusion/gacode/issues>`_, to make code modifications for testing purposes, or to issue pull requests
+2. In published results or presentations, include the code name(s) and appropriate references in the table below
+
+.. csv-table:: **Appropriate References**
+   :header: "Physics code", "Topical Area", "Suitable citation"
+   :widths: 15,20,20
+
+    CGYRO, gyrokinetic simulation, `JCP2016 <https://doi.org/10.1016/j.jcp.2016.07.039>`_
+     GYRO, gyrokinetic simulation, `JCP2003 <https://doi.org/10.1016/S0021-9991(03)00079-2>`_
+     NEO, neoclassical simulation, `PPCF2008 <https://doi.org/10.1088/0741-3335/50/9/095010>`_ | `PPCF2012 <https://doi.org/10.1088/0741-3335/54/1/015015>`_
+     TGLF, transport model, `POP2007 <https://doi.org/10.1063/1.2436852>`_ | `POP2010 <https://doi.org/10.1063/1.3505308>`_
+     TGYRO, profile evolution, `POP2009 <https://doi.org/10.1063/1.3167820>`_
+
+Source code and documentation
+-----------------------------
+
+Source code is found in the `gacode repository <https://github.com/gafusion>`_.
+For technical documentation, please refer to the `GACODE website <https://gacode.io>`_.

html/src/cgyro.rst

@@ -29,8 +29,8 @@ Simulation data courtesy Nathan Howard (MIT)
 	:width: 48 %
 	:alt: b1480
 
-Source Code
------------
+CGYRO Source Code
+-----------------
 
 `CGYRO source code <http://github.com/gafusion/gacode>`_  is available at GitHub.
 

html/src/index.rst

@@ -35,8 +35,7 @@ GACODE software works with the :ref:`input.gacode` format.
    :maxdepth: 4
    :caption: Software
 
-   license
-   download
+   README
    setup
    build
    zreferences