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The Protege 4.1 and higher build process has been refactored since Protege 4.0. This means that the locations of the various Protege 4.1 and higher plug-ins are different than the corresponding locations in Protege 4.0. There are several advantages of the new scheme: the build files are independent so that changes to one plugin can be propagated to the distribution by compiling just the plugin rather than the redoing an entire Protege build. the build files autodetect the format of the protege distribution. This means that a single build file for the os x application bundle (Protege.app) and a felix based distribution. the new build process is much simpler allowing us to more easily update the various components. Although many readers of this section will not be planning on doing an Ant build, these directions clarify the location of the various Protege 4.1 and higher plug-ins in svn. A very quick build (40 seconds) can be done with the following steps: *svn checkout http://smi-protege.stanford.edu/repos/protege/protege4/misc/composite/protege4/trunk protege4 *cd protege4 *ant install -cd Protege -run protege (e.g. sh run.sh)