Updated febioStruct2xml to allow for high speed export, regenerated h…

…elp and documentation

docs/DEMO_FEBio_AnyBody_force_analysis.m

@@ -464,7 +464,7 @@
 % image segmentation, image-based modeling, meshing, and finite element
 % analysis.
 % 
-% Copyright (C) 2017  Kevin Mattheus Moerman
+% Copyright (C) 2018  Kevin Mattheus Moerman
 % 
 % This program is free software: you can redistribute it and/or modify
 % it under the terms of the GNU General Public License as published by

docs/DEMO_FEBio_bar_force.m

@@ -288,7 +288,7 @@
 % image segmentation, image-based modeling, meshing, and finite element
 % analysis.
 % 
-% Copyright (C) 2017  Kevin Mattheus Moerman
+% Copyright (C) 2018  Kevin Mattheus Moerman
 % 
 % This program is free software: you can redistribute it and/or modify
 % it under the terms of the GNU General Public License as published by

docs/DEMO_FEBio_bar_twist.m

@@ -302,7 +302,7 @@
 % image segmentation, image-based modeling, meshing, and finite element
 % analysis.
 % 
-% Copyright (C) 2017  Kevin Mattheus Moerman
+% Copyright (C) 2018  Kevin Mattheus Moerman
 % 
 % This program is free software: you can redistribute it and/or modify
 % it under the terms of the GNU General Public License as published by

docs/DEMO_FEBio_beam_bending.m

@@ -249,7 +249,7 @@
 % image segmentation, image-based modeling, meshing, and finite element
 % analysis.
 % 
-% Copyright (C) 2017  Kevin Mattheus Moerman
+% Copyright (C) 2018  Kevin Mattheus Moerman
 % 
 % This program is free software: you can redistribute it and/or modify
 % it under the terms of the GNU General Public License as published by

docs/DEMO_FEBio_block_tension_compression_shear.m

@@ -458,7 +458,7 @@
 % image segmentation, image-based modeling, meshing, and finite element
 % analysis.
 % 
-% Copyright (C) 2017  Kevin Mattheus Moerman
+% Copyright (C) 2018  Kevin Mattheus Moerman
 % 
 % This program is free software: you can redistribute it and/or modify
 % it under the terms of the GNU General Public License as published by

docs/DEMO_FEBio_block_uniaxial_compression.m

@@ -327,7 +327,7 @@
 % image segmentation, image-based modeling, meshing, and finite element
 % analysis.
 % 
-% Copyright (C) 2017  Kevin Mattheus Moerman
+% Copyright (C) 2018  Kevin Mattheus Moerman
 % 
 % This program is free software: you can redistribute it and/or modify
 % it under the terms of the GNU General Public License as published by

docs/DEMO_FEBio_multi_scale_analysis.m

@@ -309,29 +309,6 @@
 %
 % _Kevin Mattheus Moerman_, <[email protected]>
 
-%%
-% _*GIBBON footer text*_
-%
-% License: <https://github.com/gibbonCode/GIBBON/blob/master/LICENSE>
-%
-% GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for
-% image segmentation, image-based modeling, meshing, and finite element
-% analysis.
-%
-% Copyright (C) 2017  Kevin Mattheus Moerman
-%
-% This program is free software: you can redistribute it and/or modify
-% it under the terms of the GNU General Public License as published by
-% the Free Software Foundation, either version 3 of the License, or
-% (at your option) any later version.
-%
-% This program is distributed in the hope that it will be useful,
-% but WITHOUT ANY WARRANTY; without even the implied warranty of
-% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-% GNU General Public License for more details.
-%
-% You should have received a copy of the GNU General Public License
-% along with this program.  If not, see <http://www.gnu.org/licenses/>.
 %% 
 % _*GIBBON footer text*_ 
 % 

docs/HELP_cell2txtfile.m

@@ -21,7 +21,7 @@
 % containing just spaces and a non-char entry number. The number entry will
 % be converted to a string. 
 
-T={'Hello','','World','  ',uint8(125)};
+T={'Hello','','World','  ',uint8(125),pi};
 filePath=mfilename('fullpath');
 fileName=fullfile(fileparts(fileparts(filePath)),'data','temp','temp.txt');
 skipOpt=0; %Empty entries will be kept 

docs/HELP_element2lattice.m

@@ -537,29 +537,6 @@
 %
 % _Kevin Mattheus Moerman_, <[email protected]>
 
-%%
-% _*GIBBON footer text*_
-%
-% License: <https://github.com/gibbonCode/GIBBON/blob/master/LICENSE>
-%
-% GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for
-% image segmentation, image-based modeling, meshing, and finite element
-% analysis.
-%
-% Copyright (C) 2017  Kevin Mattheus Moerman
-%
-% This program is free software: you can redistribute it and/or modify
-% it under the terms of the GNU General Public License as published by
-% the Free Software Foundation, either version 3 of the License, or
-% (at your option) any later version.
-%
-% This program is distributed in the hope that it will be useful,
-% but WITHOUT ANY WARRANTY; without even the implied warranty of
-% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-% GNU General Public License for more details.
-%
-% You should have received a copy of the GNU General Public License
-% along with this program.  If not, see <http://www.gnu.org/licenses/>.
 %% 
 % _*GIBBON footer text*_ 
 % 

docs/HELP_febioStruct2xml.m

@@ -515,7 +515,8 @@
 savePath=fullfile(defaultFolder,'data','temp');
 fileName=fullfile(savePath,'tempModel.feb');
 
-[domNode]=febioStruct2xml(febio_spec,fileName); %Exporting to file and domNode
+optionStruct.arrayParseMethod=1;
+[domNode]=febioStruct2xml(febio_spec,fileName,optionStruct);
 
 %% Viewing the FEBio input file
 % The |febView| command can be used to render and XML file in a figure
@@ -524,8 +525,8 @@
 % NOTE: The figure below does not render in documentation due to a
 % MATLAB but (or limitation). The code |[hFig]=febView(domNode);| is
 % therefore suppressed. (see also |xmlView|);
-
-% [hFig]=febView(fileName);
+%%
+% |[hFig]=febView(fileName);|
 
 %% 
 %

docs/HELP_hex2tet.m

@@ -70,29 +70,6 @@
 %
 % _Kevin Mattheus Moerman_, <[email protected]>
 
-%%
-% _*GIBBON footer text*_
-%
-% License: <https://github.com/gibbonCode/GIBBON/blob/master/LICENSE>
-%
-% GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for
-% image segmentation, image-based modeling, meshing, and finite element
-% analysis.
-%
-% Copyright (C) 2017  Kevin Mattheus Moerman
-%
-% This program is free software: you can redistribute it and/or modify
-% it under the terms of the GNU General Public License as published by
-% the Free Software Foundation, either version 3 of the License, or
-% (at your option) any later version.
-%
-% This program is distributed in the hope that it will be useful,
-% but WITHOUT ANY WARRANTY; without even the implied warranty of
-% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-% GNU General Public License for more details.
-%
-% You should have received a copy of the GNU General Public License
-% along with this program.  If not, see <http://www.gnu.org/licenses/>.
 %% 
 % _*GIBBON footer text*_ 
 % 

docs/HELP_polyRevolve.m

@@ -178,29 +178,6 @@
 %
 % _Kevin Mattheus Moerman_, <[email protected]>
 
-%%
-% _*GIBBON footer text*_
-%
-% License: <https://github.com/gibbonCode/GIBBON/blob/master/LICENSE>
-%
-% GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for
-% image segmentation, image-based modeling, meshing, and finite element
-% analysis.
-%
-% Copyright (C) 2017  Kevin Mattheus Moerman
-%
-% This program is free software: you can redistribute it and/or modify
-% it under the terms of the GNU General Public License as published by
-% the Free Software Foundation, either version 3 of the License, or
-% (at your option) any later version.
-%
-% This program is distributed in the hope that it will be useful,
-% but WITHOUT ANY WARRANTY; without even the implied warranty of
-% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-% GNU General Public License for more details.
-%
-% You should have received a copy of the GNU General Public License
-% along with this program.  If not, see <http://www.gnu.org/licenses/>.
 %% 
 % _*GIBBON footer text*_ 
 % 

docs/HELP_subHex.m

@@ -186,29 +186,6 @@
 %
 % _Kevin Mattheus Moerman_, <[email protected]>
 
-%%
-% _*GIBBON footer text*_
-%
-% License: <https://github.com/gibbonCode/GIBBON/blob/master/LICENSE>
-%
-% GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for
-% image segmentation, image-based modeling, meshing, and finite element
-% analysis.
-%
-% Copyright (C) 2017  Kevin Mattheus Moerman
-%
-% This program is free software: you can redistribute it and/or modify
-% it under the terms of the GNU General Public License as published by
-% the Free Software Foundation, either version 3 of the License, or
-% (at your option) any later version.
-%
-% This program is distributed in the hope that it will be useful,
-% but WITHOUT ANY WARRANTY; without even the implied warranty of
-% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-% GNU General Public License for more details.
-%
-% You should have received a copy of the GNU General Public License
-% along with this program.  If not, see <http://www.gnu.org/licenses/>.
 %% 
 % _*GIBBON footer text*_ 
 % 

docs/docTools/removeCodeFooter.m

@@ -34,7 +34,7 @@
         if ~isempty(targetStartIndex)
             targetStartIndex=targetStartIndex(end); %Keep last occurance
             T_now=T_now(1:targetStartIndex-1-1); %NB -1 is used to remove %% above target 
-            cell2txtfile(fileName,T_now,0);
+            cell2txtfile(fileName,T_now,0,0);
         end
     end
 end