Added more useful queries for TiO2

h2020-sbd4nano · May 20, 2024 · f1569b9 · f1569b9
1 parent b3b5bdb
commit f1569b9
Show file tree

Hide file tree

Showing 9 changed files with 343 additions and 7 deletions.
diff --git a/docs/index.md b/docs/index.md
@@ -37,10 +37,12 @@ Issues, comments, questions can be reported [here](https://github.com/h2020-sbd4
 5.3. [Relationships by outcome](relationships.md#relationships-by-outcome) <br />
 5.4. [All relationships](relationships.md#all-relationships) <br />
 6. [Titanium Oxide](tio2.md) <br />
-6.1. [Causal relationships](tio2.md#causal-relationships) <br />
-6.1.1. [All metal oxides](tio2.md#all-metal-oxides) <br />
-6.2. [TiO2 datasets](tio2.md#tio2-datasets) <br />
-6.3. [TiO2 Models](tio2.md#tio2-models) <br />
+6.1. [Resources](tio2.md#resources) <br />
+6.2. [Causal relationships](tio2.md#causal-relationships) <br />
+6.2.1. [All tatanium dioxides](tio2.md#all-tatanium-dioxides) <br />
+6.2.2. [All metal oxides](tio2.md#all-metal-oxides) <br />
+6.3. [TiO2 datasets](tio2.md#tio2-datasets) <br />
+6.4. [TiO2 Models](tio2.md#tio2-models) <br />
 7. [Carbon nanotubes](cnt.md) <br />
 7.1. [Causal relationships](cnt.md#causal-relationships) <br />
 7.2. [Carbon nanotube datasets](cnt.md#carbon-nanotube-datasets) <br />

diff --git a/docs/sparql/allTitaniaResources.code.md b/docs/sparql/allTitaniaResources.code.md
@@ -0,0 +1,94 @@
+# allTitaniaResources.rq
+
+**Code examples:** [curl](#curl)
+
+### SPARQL
+
+```sparql
+PREFIX sbd:  <https://www.sbd4nano.eu/rdf/#>
+PREFIX sbdbel:  <https://www.sbd4nano.eu/bel/#>
+PREFIX dcterms: <http://purl.org/dc/terms/>
+PREFIX npo: <http://purl.bioontology.org/ontology/npo#>
+PREFIX obo: <http://purl.obolibrary.org/obo/>
+PREFIX enm: <http://purl.enanomapper.org/onto/>
+PREFIX sio: <http://semanticscience.org/resource/SIO_>
+PREFIX sbdbel2:  <https://h2020-sbd4nano.github.io/sbdbel/>
+
+SELECT DISTINCT ?superclasses (SAMPLE(?superclassesLabel_) AS ?superclassesLabel) ?type (COUNT(DISTINCT ?resource) AS ?count)
+WHERE {
+  VALUES ?superclasses { npo:NPO_1541 npo:NPO_1486 enm:ENM_9000077 } # metal oxide, TiO2, JRCNM01005a
+  ?nm rdfs:subClassOf* ?superclasses .
+  ?superclasses rdfs:label ?superclassesLabel_ .
+  OPTIONAL {
+    ?resource a ?type ;
+              sbdbel:NP | sio:000332 | sbdbel2:NP ?nm .
+    ?type rdfs:label ?typeLabel .
+  }
+} GROUP BY ?superclasses ?superclassesLabel ?type
+  ORDER BY DESC(?count)
+```
+
+[run](https://sbd4nanolandscape.rdf.bigcat-bioinformatics.org/?q=PREFIX%20sbd%3A%20%20%3Chttps%3A%2F%2Fwww.sbd4nano.eu%2Frdf%2F%23%3E%0APREFIX%20sbdbel%3A%20%20%3Chttps%3A%2F%2Fwww.sbd4nano.eu%2Fbel%2F%23%3E%0APREFIX%20dcterms%3A%20%3Chttp%3A%2F%2Fpurl.org%2Fdc%2Fterms%2F%3E%0APREFIX%20npo%3A%20%3Chttp%3A%2F%2Fpurl.bioontology.org%2Fontology%2Fnpo%23%3E%0APREFIX%20obo%3A%20%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2F%3E%0APREFIX%20enm%3A%20%3Chttp%3A%2F%2Fpurl.enanomapper.org%2Fonto%2F%3E%0APREFIX%20sio%3A%20%3Chttp%3A%2F%2Fsemanticscience.org%2Fresource%2FSIO_%3E%0APREFIX%20sbdbel2%3A%20%20%3Chttps%3A%2F%2Fh2020-sbd4nano.github.io%2Fsbdbel%2F%3E%0A%0ASELECT%20DISTINCT%20%3Fsuperclasses%20%28SAMPLE%28%3FsuperclassesLabel_%29%20AS%20%3FsuperclassesLabel%29%20%3Ftype%20%28COUNT%28DISTINCT%20%3Fresource%29%20AS%20%3Fcount%29%0AWHERE%20%7B%0A%20%20VALUES%20%3Fsuperclasses%20%7B%20npo%3ANPO_1541%20npo%3ANPO_1486%20enm%3AENM_9000077%20%7D%20%23%20metal%20oxide%2C%20TiO2%2C%20JRCNM01005a%0A%20%20%3Fnm%20rdfs%3AsubClassOf*%20%3Fsuperclasses%20.%0A%20%20%3Fsuperclasses%20rdfs%3Alabel%20%3FsuperclassesLabel_%20.%0A%20%20OPTIONAL%20%7B%0A%20%20%20%20%3Fresource%20a%20%3Ftype%20%3B%0A%20%20%20%20%20%20%20%20%20%20%20%20%20%20sbdbel%3ANP%20%7C%20sio%3A000332%20%7C%20sbdbel2%3ANP%20%3Fnm%20.%0A%20%20%20%20%3Ftype%20rdfs%3Alabel%20%3FtypeLabel%20.%0A%20%20%7D%0A%7D%20GROUP%20BY%20%3Fsuperclasses%20%3FsuperclassesLabel%20%3Ftype%0A%20%20ORDER%20BY%20DESC%28%3Fcount%29%0A)
+
+
+### Output
+
+<table>
+  <tr>
+    <td><b>superclasses</b></td>
+    <td><b>type</b></td>
+    <td><b>count</b></td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td>https://www.sbd4nano.eu/rdf/#Model</td>
+    <td>12</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td>https://www.sbd4nano.eu/rdf/#Database</td>
+    <td>7</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td>https://www.sbd4nano.eu/rdf/#Dataset</td>
+    <td>7</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td>https://h2020-sbd4nano.github.io/sbdbel/CausalAssertion</td>
+    <td>6</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1486">R-TiO2</a></td>
+    <td>https://www.sbd4nano.eu/rdf/#Dataset</td>
+    <td>1</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1486">R-TiO2</a></td>
+    <td></td>
+    <td>0</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td></td>
+    <td>0</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.enanomapper.org/onto/ENM_9000077">JRCNM01005a</a></td>
+    <td></td>
+    <td>0</td>
+  </tr>
+</table>
+
+## Code examples
+
+### curl
+
+```shell
+curl -s https://raw.githubusercontent.com/h2020-sbd4nano/sbd-data-book/master/sparql/allTitaniaResources.rq | sed 's+<lang/>+en+' > allTitaniaResources.rq
+
+curl -H "Accept: text/tab-separated-values" -G https://sbd4nanolandscape.rdf.bigcat-bioinformatics.org/sparql --data-urlencode [email protected]
+```
+
+This SPARQL query is available under CCZero.
diff --git a/docs/sparql/allTitaniumOxideRelationships.code.md b/docs/sparql/allTitaniumOxideRelationships.code.md
@@ -0,0 +1,45 @@
+# allTitaniumOxideRelationships.rq
+
+**Code examples:** [curl](#curl)
+
+### SPARQL
+
+```sparql
+PREFIX sbd:  <https://www.sbd4nano.eu/rdf/#>
+PREFIX sbdbel:  <https://www.sbd4nano.eu/bel/#>
+PREFIX npo: <http://purl.bioontology.org/ontology/npo#>
+
+SELECT DISTINCT
+  ?superclass (SAMPLE(?superclassLabel_) AS ?superclassLabel)
+  ?nm (SAMPLE(?nmLabel_) AS ?nmLabel)
+  (COUNT(DISTINCT ?relation) AS ?relations)
+WHERE {
+  VALUES ?ca { sbdbel:CausalAssertion sbd:CausalAssertion }
+  VALUES ?superclass { npo:NPO_1486 }
+  ?nm rdfs:subClassOf* ?superclass ; rdfs:label ?nmLabel_ .
+  ?superclass rdfs:label ?superclassLabel_ .
+  ?relation a ?ca ; sbdbel:NP ?nm .
+} GROUP BY ?superclass ?nm
+```
+
+[run](https://sbd4nanolandscape.rdf.bigcat-bioinformatics.org/?q=PREFIX%20sbd%3A%20%20%3Chttps%3A%2F%2Fwww.sbd4nano.eu%2Frdf%2F%23%3E%0APREFIX%20sbdbel%3A%20%20%3Chttps%3A%2F%2Fwww.sbd4nano.eu%2Fbel%2F%23%3E%0APREFIX%20npo%3A%20%3Chttp%3A%2F%2Fpurl.bioontology.org%2Fontology%2Fnpo%23%3E%0A%0ASELECT%20DISTINCT%0A%20%20%3Fsuperclass%20%28SAMPLE%28%3FsuperclassLabel_%29%20AS%20%3FsuperclassLabel%29%0A%20%20%3Fnm%20%28SAMPLE%28%3FnmLabel_%29%20AS%20%3FnmLabel%29%0A%20%20%28COUNT%28DISTINCT%20%3Frelation%29%20AS%20%3Frelations%29%0AWHERE%20%7B%0A%20%20VALUES%20%3Fca%20%7B%20sbdbel%3ACausalAssertion%20sbd%3ACausalAssertion%20%7D%0A%20%20VALUES%20%3Fsuperclass%20%7B%20npo%3ANPO_1486%20%7D%0A%20%20%3Fnm%20rdfs%3AsubClassOf*%20%3Fsuperclass%20%3B%20rdfs%3Alabel%20%3FnmLabel_%20.%0A%20%20%3Fsuperclass%20rdfs%3Alabel%20%3FsuperclassLabel_%20.%0A%20%20%3Frelation%20a%20%3Fca%20%3B%20sbdbel%3ANP%20%3Fnm%20.%0A%7D%20GROUP%20BY%20%3Fsuperclass%20%3Fnm%0A)
+
+
+### Output
+
+<table>
+  <tr>
+  </tr>
+</table>
+
+## Code examples
+
+### curl
+
+```shell
+curl -s https://raw.githubusercontent.com/h2020-sbd4nano/sbd-data-book/master/sparql/allTitaniumOxideRelationships.rq | sed 's+<lang/>+en+' > allTitaniumOxideRelationships.rq
+
+curl -H "Accept: text/tab-separated-values" -G https://sbd4nanolandscape.rdf.bigcat-bioinformatics.org/sparql --data-urlencode [email protected]
+```
+
+This SPARQL query is available under CCZero.
diff --git a/docs/tio2.md b/docs/tio2.md
@@ -3,7 +3,7 @@
 # Titanium Oxide
 
 Because the eNanoMapper ontology [<a href="#citeref1">1</a>] is loaded, we can take advantage of the
-hierarchy of the ontology. For example, we can list all <a name="tp1">titania</a>'s (npo:NPO_1486)
+hierarchy of the ontology. For example, we can list all <a name="tp1">titania</a>'s (`npo:NPO_1486`)
 with this SPARQL:
 
 **SPARQL** [sparql/allTitanias.rq](sparql/allTitanias.code.html) ([run](https://sbd4nanolandscape.rdf.bigcat-bioinformatics.org/?q=PREFIX%20npo%3A%20%3Chttp%3A%2F%2Fpurl.bioontology.org%2Fontology%2Fnpo%23%3E%0APREFIX%20obo%3A%20%3Chttp%3A%2F%2Fpurl.obolibrary.org%2Fobo%2F%3E%0A%0ASELECT%20DISTINCT%20%3Fnm%20%28SAMPLE%28%3FnmLabel_%29%20AS%20%3FnmLabel%29%0AWHERE%20%7B%0A%20%20VALUES%20%3Fsuperclass%20%7B%20npo%3ANPO_1486%20obo%3ACHEBI_51050%20%7D%0A%20%20%3Fnm%20rdfs%3AsubClassOf*%20%3Fsuperclass%20%3B%20rdfs%3Alabel%20%3FnmLabel_%20.%0A%7D%20GROUP%20BY%20%3Fnm%0A))
@@ -115,6 +115,63 @@ This gives us this list of nanomaterials:
   </tr>
 </table>
 
+## Resources
+
+Using the hierarchy, we can find resources about a specific nanomaterial or about any of its
+superclasses:
+
+<sparq>allTitaniaResources</sparql>
+
+This returns:
+
+<table>
+  <tr>
+    <td><b>superclasses</b></td>
+    <td><b>type</b></td>
+    <td><b>count</b></td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td>https://www.sbd4nano.eu/rdf/#Model</td>
+    <td>12</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td>https://www.sbd4nano.eu/rdf/#Database</td>
+    <td>7</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td>https://www.sbd4nano.eu/rdf/#Dataset</td>
+    <td>7</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td>https://h2020-sbd4nano.github.io/sbdbel/CausalAssertion</td>
+    <td>6</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1486">R-TiO2</a></td>
+    <td>https://www.sbd4nano.eu/rdf/#Dataset</td>
+    <td>1</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1486">R-TiO2</a></td>
+    <td></td>
+    <td>0</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.bioontology.org/ontology/npo#NPO_1541">Metal Oxide</a></td>
+    <td></td>
+    <td>0</td>
+  </tr>
+  <tr>
+    <td><a href="http://purl.enanomapper.org/onto/ENM_9000077">JRCNM01005a</a></td>
+    <td></td>
+    <td>0</td>
+  </tr>
+</table>
+
 ## Causal relationships
 
 This approach can be used to find datasets, models, causal relationships, etc applicable to a certain
@@ -153,6 +210,35 @@ But for a specific material, such relationships may not exist:
 In that case, we can better look for relationships for the class of nanoforms this
 material is part of.
 
+### All tatanium dioxides
+
+For example, we can list all relationships for all metal oxides:
+
+**SPARQL** [sparql/allTitaniumOxideRelationships.rq](sparql/allTitaniumOxideRelationships.code.html) ([run](https://sbd4nanolandscape.rdf.bigcat-bioinformatics.org/?q=PREFIX%20sbd%3A%20%20%3Chttps%3A%2F%2Fwww.sbd4nano.eu%2Frdf%2F%23%3E%0APREFIX%20sbdbel%3A%20%20%3Chttps%3A%2F%2Fwww.sbd4nano.eu%2Fbel%2F%23%3E%0APREFIX%20npo%3A%20%3Chttp%3A%2F%2Fpurl.bioontology.org%2Fontology%2Fnpo%23%3E%0A%0ASELECT%20DISTINCT%0A%20%20%3Fsuperclass%20%28SAMPLE%28%3FsuperclassLabel_%29%20AS%20%3FsuperclassLabel%29%0A%20%20%3Fnm%20%28SAMPLE%28%3FnmLabel_%29%20AS%20%3FnmLabel%29%0A%20%20%28COUNT%28DISTINCT%20%3Frelation%29%20AS%20%3Frelations%29%0AWHERE%20%7B%0A%20%20VALUES%20%3Fca%20%7B%20sbdbel%3ACausalAssertion%20sbd%3ACausalAssertion%20%7D%0A%20%20VALUES%20%3Fsuperclass%20%7B%20npo%3ANPO_1486%20%7D%0A%20%20%3Fnm%20rdfs%3AsubClassOf*%20%3Fsuperclass%20%3B%20rdfs%3Alabel%20%3FnmLabel_%20.%0A%20%20%3Fsuperclass%20rdfs%3Alabel%20%3FsuperclassLabel_%20.%0A%20%20%3Frelation%20a%20%3Fca%20%3B%20sbdbel%3ANP%20%3Fnm%20.%0A%7D%20GROUP%20BY%20%3Fsuperclass%20%3Fnm%0A))
+```sparql
+PREFIX sbd:  <https://www.sbd4nano.eu/rdf/#>
+PREFIX sbdbel:  <https://www.sbd4nano.eu/bel/#>
+PREFIX npo: <http://purl.bioontology.org/ontology/npo#>
+SELECT DISTINCT
+  ?superclass (SAMPLE(?superclassLabel_) AS ?superclassLabel)
+  ?nm (SAMPLE(?nmLabel_) AS ?nmLabel)
+  (COUNT(DISTINCT ?relation) AS ?relations)
+WHERE {
+  VALUES ?ca { sbdbel:CausalAssertion sbd:CausalAssertion }
+  VALUES ?superclass { npo:NPO_1486 }
+  ?nm rdfs:subClassOf* ?superclass ; rdfs:label ?nmLabel_ .
+  ?superclass rdfs:label ?superclassLabel_ .
+  ?relation a ?ca ; sbdbel:NP ?nm .
+} GROUP BY ?superclass ?nm
+```
+
+But this still returns no relationships:
+
+<table>
+  <tr>
+  </tr>
+</table>
+
 ### All metal oxides
 
 For example, we can list all relationships for all metal oxides:

diff --git a/grlc/allTitaniaResources.rq b/grlc/allTitaniaResources.rq
@@ -0,0 +1,29 @@
+#+ endpoint: https://sbd4nanolandscape.rdf.bigcat-bioinformatics.org/sparql
+#+ endpoint_in_url: False
+#+ enumerate:
+#+   - lang:
+#+     - en,en
+
+
+PREFIX sbd:  <https://www.sbd4nano.eu/rdf/#>
+PREFIX sbdbel:  <https://www.sbd4nano.eu/bel/#>
+PREFIX dcterms: <http://purl.org/dc/terms/>
+PREFIX npo: <http://purl.bioontology.org/ontology/npo#>
+PREFIX obo: <http://purl.obolibrary.org/obo/>
+PREFIX enm: <http://purl.enanomapper.org/onto/>
+PREFIX sio: <http://semanticscience.org/resource/SIO_>
+PREFIX sbdbel2:  <https://h2020-sbd4nano.github.io/sbdbel/>
+
+SELECT DISTINCT ?superclasses (SAMPLE(?superclassesLabel_) AS ?superclassesLabel) ?type (COUNT(DISTINCT ?resource) AS ?count)
+WHERE {
+  VALUES ?superclasses { npo:NPO_1541 npo:NPO_1486 enm:ENM_9000077 } # metal oxide, TiO2, JRCNM01005a
+  ?nm rdfs:subClassOf* ?superclasses .
+  ?superclasses rdfs:label ?superclassesLabel_ .
+  OPTIONAL {
+    ?resource a ?type ;
+              sbdbel:NP | sio:000332 | sbdbel2:NP ?nm .
+    ?type rdfs:label ?typeLabel .
+  }
+} GROUP BY ?superclasses ?superclassesLabel ?type
+  ORDER BY DESC(?count)
+
diff --git a/grlc/allTitaniumOxideRelationships.rq b/grlc/allTitaniumOxideRelationships.rq
@@ -0,0 +1,23 @@
+#+ endpoint: https://sbd4nanolandscape.rdf.bigcat-bioinformatics.org/sparql
+#+ endpoint_in_url: False
+#+ enumerate:
+#+   - lang:
+#+     - en,en
+
+
+PREFIX sbd:  <https://www.sbd4nano.eu/rdf/#>
+PREFIX sbdbel:  <https://www.sbd4nano.eu/bel/#>
+PREFIX npo: <http://purl.bioontology.org/ontology/npo#>
+
+SELECT DISTINCT
+  ?superclass (SAMPLE(?superclassLabel_) AS ?superclassLabel)
+  ?nm (SAMPLE(?nmLabel_) AS ?nmLabel)
+  (COUNT(DISTINCT ?relation) AS ?relations)
+WHERE {
+  VALUES ?ca { sbdbel:CausalAssertion sbd:CausalAssertion }
+  VALUES ?superclass { npo:NPO_1486 }
+  ?nm rdfs:subClassOf* ?superclass ; rdfs:label ?nmLabel_ .
+  ?superclass rdfs:label ?superclassLabel_ .
+  ?relation a ?ca ; sbdbel:NP ?nm .
+} GROUP BY ?superclass ?nm
+
diff --git a/sparql/allTitaniaResources.rq b/sparql/allTitaniaResources.rq
@@ -0,0 +1,21 @@
+PREFIX sbd:  <https://www.sbd4nano.eu/rdf/#>
+PREFIX sbdbel:  <https://www.sbd4nano.eu/bel/#>
+PREFIX dcterms: <http://purl.org/dc/terms/>
+PREFIX npo: <http://purl.bioontology.org/ontology/npo#>
+PREFIX obo: <http://purl.obolibrary.org/obo/>
+PREFIX enm: <http://purl.enanomapper.org/onto/>
+PREFIX sio: <http://semanticscience.org/resource/SIO_>
+PREFIX sbdbel2:  <https://h2020-sbd4nano.github.io/sbdbel/>
+
+SELECT DISTINCT ?superclasses (SAMPLE(?superclassesLabel_) AS ?superclassesLabel) ?type (COUNT(DISTINCT ?resource) AS ?count)
+WHERE {
+  VALUES ?superclasses { npo:NPO_1541 npo:NPO_1486 enm:ENM_9000077 } # metal oxide, TiO2, JRCNM01005a
+  ?nm rdfs:subClassOf* ?superclasses .
+  ?superclasses rdfs:label ?superclassesLabel_ .
+  OPTIONAL {
+    ?resource a ?type ;
+              sbdbel:NP | sio:000332 | sbdbel2:NP ?nm .
+    ?type rdfs:label ?typeLabel .
+  }
+} GROUP BY ?superclasses ?superclassesLabel ?type
+  ORDER BY DESC(?count)
diff --git a/sparql/allTitaniumOxideRelationships.rq b/sparql/allTitaniumOxideRelationships.rq
@@ -0,0 +1,15 @@
+PREFIX sbd:  <https://www.sbd4nano.eu/rdf/#>
+PREFIX sbdbel:  <https://www.sbd4nano.eu/bel/#>
+PREFIX npo: <http://purl.bioontology.org/ontology/npo#>
+
+SELECT DISTINCT
+  ?superclass (SAMPLE(?superclassLabel_) AS ?superclassLabel)
+  ?nm (SAMPLE(?nmLabel_) AS ?nmLabel)
+  (COUNT(DISTINCT ?relation) AS ?relations)
+WHERE {
+  VALUES ?ca { sbdbel:CausalAssertion sbd:CausalAssertion }
+  VALUES ?superclass { npo:NPO_1486 }
+  ?nm rdfs:subClassOf* ?superclass ; rdfs:label ?nmLabel_ .
+  ?superclass rdfs:label ?superclassLabel_ .
+  ?relation a ?ca ; sbdbel:NP ?nm .
+} GROUP BY ?superclass ?nm